PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g74800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family AP2
Protein Properties Length: 286aa    MW: 33044.2 Da    PI: 7.4943
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g74800genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.44.6e-104399155
         AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                s y+GV++++++gr++A+++d  ++n  ++k+ + g +  ++ A  a++ a++k++g
  CA00g74800 43 SIYRGVTRHRWTGRYEAHLWDkNCWNDtQTKKGRQGAYNDEDAAGHAYDLAALKYWG 99
                57*******************999988877777779999989999**********98 PP

2AP241.53.4e-13144190655
         AP2   6 VrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +++++ +grW+A+I   +   g +k+ +lg++ ++eeAa a++ a+ +++g
  CA00g74800 144 ICRHHHNGRWEARIGRvF---G-NKYLYLGTYASEEEAAMAYDMAAIEYRG 190
                 678999*******99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.16E-1343108IPR016177DNA-binding domain
PfamPF008472.4E-64399IPR001471AP2/ERF domain
CDDcd000181.17E-1243107No hitNo description
PROSITE profilePS5103217.13544107IPR001471AP2/ERF domain
SMARTSM003801.3E-1544113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-1144107IPR001471AP2/ERF domain
PRINTSPR003671.4E-64556IPR001471AP2/ERF domain
PROSITE profilePS5103214.974140198IPR001471AP2/ERF domain
PfamPF008473.4E-9145190IPR001471AP2/ERF domain
SMARTSM003805.9E-21146204IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-15146199IPR001471AP2/ERF domain
CDDcd000186.07E-21146200No hitNo description
SuperFamilySSF541712.03E-15146200IPR016177DNA-binding domain
PRINTSPR003671.4E-6180200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAKTSKSLRK NTSSSKNSDK AISKGKRKRK AVSKDSPPQQ RSSIYRGVTR HRWTGRYEAH  60
LWDKNCWNDT QTKKGRQGAY NDEDAAGHAY DLAALKYWGQ HTILNFPLIL NEEELYFKPY  120
IIFFFFVCFI SSILCVTVFC ITHICRHHHN GRWEARIGRV FGNKYLYLGT YASEEEAAMA  180
YDMAAIEYRG QNAVTNFDLS RYLNTIPNTN QILEKTSAVD PPETPPESEK PRRSFPDYIQ  240
TYFEVCQDSS SFVDDEHDII FGELDSFVLP MFQCELEYCP NIEAR*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754454e-36HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016576989.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN43e-83AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2G2ZC690.0A0A2G2ZC69_CAPAN; AP2-like ethylene-responsive transcription factor
STRINGXP_009621695.11e-111(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.12e-77ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]