PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g67930
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 226aa    MW: 24906.3 Da    PI: 9.4538
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g67930genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-1694143355
         AP2   3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y GVr++  +g ++AeIrdp   + k +r +lg++  +e+Aa a+++a+ k++g
  CA00g67930  94 YIGVRRRQ-WGTFAAEIRDP---NrKGARLWLGTYEKPEDAALAYDQAAFKMRG 143
                 99***887.**********9...6566*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.8E-3093152IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-2193152IPR016177DNA-binding domain
PROSITE profilePS5103222.14293151IPR001471AP2/ERF domain
SMARTSM003801.1E-3293157IPR001471AP2/ERF domain
CDDcd000181.25E-2793153No hitNo description
PfamPF008471.6E-1193143IPR001471AP2/ERF domain
PRINTSPR003679.6E-1194105IPR001471AP2/ERF domain
PRINTSPR003679.6E-11133153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MNPVDDEIFS SDFDLLESIK QHLLSDSDFS DFFSPMSHSN NLDSPNSPSS SLGSTQNSLE  60
EITVLQSPQD PSLESEDRKR GLEXXAAPGD WMRYIGVRRR QWGTFAAEIR DPNRKGARLW  120
LGTYEKPEDA ALAYDQAAFK MRGSKARLNF PHLIGPDMPM LVRVKGSRRA HSSESSSSSS  180
SSSSSSSSTS STSSEKGARK RKIDVINSIA KAKLVRHSLI KLQML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2494151360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate. {ECO:0000250, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Highly and transiently expressed in tobacco mosaic virus (TMV) infected leaves. Induced by methyl-jasmonate (MeJA), and by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Quickly and transiently induced by salicylic acid (SA). Strongly induced by wounding, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by MeJA. Also induced by acetyl salicylic acid (ASA), cycloheximide, auxin (2,4-D), and benzoic acid (BA) but seems to not be influenced by 4-hydroxybenzoic acid (4HBA), thiamine, H(2)O(2) or abscisic acid (ABA). {ECO:0000269|PubMed:7756828, ECO:0000269|PubMed:9725022, ECO:0000269|Ref.2}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016557634.11e-133PREDICTED: ethylene-responsive transcription factor 1-like
SwissprotQ404763e-34ERF1_TOBAC; Ethylene-responsive transcription factor 1
TrEMBLA0A2G3AMB91e-159A0A2G3AMB9_CAPAN; Ethylene-responsive transcription factor 1
STRINGPGSC0003DMT4000670181e-75(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.15e-34ethylene-responsive element binding factor 13