PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g64350
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 94aa    MW: 10697.8 Da    PI: 7.7688
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g64350genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.5e-10753144
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     r +WT++  +l+ +a +q+ ++   +W  +ar +g g++++++k ++
       CA00g64350  7 RSSWTPQQNKLFERALAQFDKDtpdRWQNVARAVGGGKSAEEVKRHY 53
                     789*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.199561IPR017884SANT domain
SMARTSM007171.7E-8659IPR001005SANT/Myb domain
PfamPF002499.2E-8753IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-4757IPR009057Homeodomain-like
SuperFamilySSF466898.22E-13865IPR009057Homeodomain-like
CDDcd001671.01E-5957No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MASSSLRSSW TPQQNKLFER ALAQFDKDTP DRWQNVARAV GGGKSAEEVK RHYEILLEDL  60
RRIESGHVPF PTYTNNANNG VGANEEHRYL LYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-2710791179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582408.19e-53PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1731e-29RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2G2XX789e-64A0A2G2XX78_CAPAN; Protein RADIALIS-like 6
STRINGXP_009779120.11e-49(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.18e-32RAD-like 6