PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g57890
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family E2F/DP
Protein Properties Length: 207aa    MW: 23251.6 Da    PI: 8.8896
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g57890genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP65.95.3e-2159138471
     E2F_TDP   4 ksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                  +Lr+++ +   +++k+e+ g++t+ eva+e+++e               d+kn rRR+YD lNVL+al++ie+ +++ei+wkg
  CA00g57890  59 GGLRQYSIM---VCKKVEDkGRITYGEVADEIIAEfmatdsnssvpisesDEKNVRRRVYDSLNVLMALDVIER-DRKEIHWKG 138
                 688888888...**************************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3354142IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.4E-2056138IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.98E-1659139IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023196.6E-1859138IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440742.01E-12145207No hitNo description
PfamPF087812.5E-10146207IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MMDVKTSAST FEGFNQRCSK GKSSFRATTG CDDKFLHVKQ HAQTSDTAKL KKGSKIVEGG  60
LRQYSIMVCK KVEDKGRITY GEVADEIIAE FMATDSNSSV PISESDEKNV RRRVYDSLNV  120
LMALDVIERD RKEIHWKGLP NSDARDMEEI KMLHAELMAK IGKKAAYLQD LEEQLANLQN  180
LKLRNEKLCK STKGSSQGVS LPFVLVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-26601451195PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-56HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016542614.11e-153PREDICTED: transcription factor-like protein DPA isoform X1
SwissprotQ9FNY21e-51DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A1U8EFG71e-151A0A1U8EFG7_CAPAN; Transcription factor-like protein DPA
TrEMBLA0A2G2VXG71e-151A0A2G2VXG7_CAPBA; Transcription factor-like protein DPA
TrEMBLA0A2G2YQY01e-151A0A2G2YQY0_CAPAN; transcription factor-like protein DPA isoform X1
STRINGPGSC0003DMT4000230361e-121(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1488399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.16e-54Transcription factor DP