PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g49930
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 195aa    MW: 22266.3 Da    PI: 9.8972
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g49930genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.6e-18140188254
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                 +ykGVr+++ +g+Wv+eIr p++   r+r +lg+f++aeeAa a++  + +l+
  CA00g49930 140 RYKGVRQHH-WGKWVVEIRLPCK---RTRLWLGTFDSAEEAAIAYDVEAFRLK 188
                 8*******9.**********954...5*******************9999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.63E-26139187No hitNo description
PROSITE profilePS5103218.966140194IPR001471AP2/ERF domain
PfamPF008471.4E-11140187IPR001471AP2/ERF domain
SMARTSM003801.7E-20140191IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-17140189IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-23140191IPR001471AP2/ERF domain
PRINTSPR003678.2E-10141152IPR001471AP2/ERF domain
PRINTSPR003678.2E-10163179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MEYVESIGKV QSTMSRDRPL KKLKLSPSSK HVNLVAPFFN PSYDPKQSNK SNGDKVGPER  60
IREPGYELGF RFPFALDDPP STSNCHLNWQ SLSQNQTMIS FAPQNYLNLD YDPHHHATLT  120
TSMKTMVNVY STYSSPAPKR YKGVRQHHWG KWVVEIRLPC KRTRLWLGTF DSAEEAAIAY  180
DVEAFRLKRN KCAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-14139191154ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-13139192458ATERF1
3gcc_A1e-13139192458ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016540768.11e-135PREDICTED: ethylene-responsive transcription factor ERF053-like
TrEMBLA0A1U8E0G41e-134A0A1U8E0G4_CAPAN; ethylene-responsive transcription factor ERF053-like
STRINGPGSC0003DMT4000395768e-71(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.12e-23ERF family protein