PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g41250
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 302aa    MW: 33053.4 Da    PI: 7.9283
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g41250genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.9e-20167216255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a+++a+ +++g
  CA00g41250 167 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFNTAEDAARAYDRAAIEFRG 216
                 59*******.**********94....36************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.02E-23166223No hitNo description
Gene3DG3DSA:3.30.730.109.5E-32167224IPR001471AP2/ERF domain
PROSITE profilePS5103224.803167224IPR001471AP2/ERF domain
SMARTSM003806.9E-38167230IPR001471AP2/ERF domain
PfamPF008474.2E-14167216IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-22167224IPR016177DNA-binding domain
PRINTSPR003678.0E-12168179IPR001471AP2/ERF domain
PRINTSPR003678.0E-12190206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MTKNSNFSNM HWLNKRFKQD GTSSSLQNNQ QFQQQIPRRL TGDQEYSVMV SALKNVINGN  60
IPIDSNQGLN MFSPFQYSTG MNATSSPSTS MSTSFEQVLG VPAEQEPCQF CRIQGCLGCD  120
IFGTTFGSSS SSAAAAAATA TATIAPVADN KKKSASTSAI AKKKKKNYRG VRQRPWGKWA  180
AEIRDPRKAA RVWLGTFNTA EDAARAYDRA AIEFRGPRAK LNFSFADYTV ETPEQQSTSS  240
SSPQQLQEEP QQSLQQGNNN SDFGSEIWDQ LMGDNEIQDW LTMMNFNGDS SDSTGGNVHS  300
V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-24166223159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150165KKKSASTSAIAKKKKK
2160166AKKKKKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582027.10.0PREDICTED: ethylene-responsive transcription factor ERF109
TrEMBLA0A2G2Y0250.0A0A2G2Y025_CAPAN; Ethylene-responsive transcription factor
STRINGPGSC0003DMT4000663431e-138(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.15e-30redox responsive transcription factor 1