PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_126100_ryfn.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family TCP
Protein Properties Length: 339aa    MW: 38704.9 Da    PI: 7.576
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_126100_ryfn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.72.6e-351412832133
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...sec..eaesssssasnsss 87 
                         a  kdrhski T+ g+RdRR+Rls+++a+ fF+Lqd+LG+dk+s t+eWLl q+k ai e+  ++s+s+   ++c  ++ s+  ++     
  Bv5_126100_ryfn.t1 141 ASNKDRHSKIRTAHGLRDRRMRLSLQVARPFFKLQDMLGYDKASRTVEWLLLQSKSAIEEILHSKSTSPsgvTKCtiSSTSDDCEV----- 226
                         678*************************************************************5555524423322111111111..... PP

                 TCP  88 g...........kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                         +           k+++++++  k+++ +++     ke+r+ ar+ra++rt e+m+ +
  Bv5_126100_ryfn.t1 227 EstiieemkedrKEKRASTCVTKKDEVKQKRKRTTKEERKVARERAKKRTLERMQSR 283
                         112233444454444444455555555555689999******************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-38142282IPR005333Transcription factor, TCP
PROSITE profilePS5136931.686143201IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MLRSSSFTNN NTSPILYVDN ILSYLLDDLN PNSKQEDPTT YSTSYYHLPS PLIYNEIDDF  60
VSNHDLEFIQ QALNANNSNN SFNFTDDSSI LDVDNKVVDG SNKGDEINGI VEDGEMNHTI  120
ISSTKKSSTR NNNGGLKKKR ASNKDRHSKI RTAHGLRDRR MRLSLQVARP FFKLQDMLGY  180
DKASRTVEWL LLQSKSAIEE ILHSKSTSPS GVTKCTISST SDDCEVESTI IEEMKEDRKE  240
KRASTCVTKK DEVKQKRKRT TKEERKVARE RAKKRTLERM QSRGRVTGEG SNNFVLDDFD  300
LTENWNPLTT FSYQQSFEDC QTVPNYTIST QQNMVHGPQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695622.10.0PREDICTED: transcription factor TCP18-like
TrEMBLA0A0J8BBZ70.0A0A0J8BBZ7_BETVU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.25e-24TCP family protein