PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_124720_syoe.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family TCP
Protein Properties Length: 294aa    MW: 31639.8 Da    PI: 8.7487
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_124720_syoe.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.55.7e-3948135288
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 
                         a+k+++++++hTkv+gR RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+pai ++tg+++++as+   ++s  ss+s+++++
  Bv5_124720_syoe.t1  48 APKRSSNKDRHTKVDGRSRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPAILAATGSGTIPASFLaASASGASSVSQQGAS 135
                         789******************************************************************8887444444444433333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-3253292IPR005333Transcription factor, TCP
PROSITE profilePS5136927.31954108IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MNDNRNPEEK HLVSITTTTT TSTSTPTSNS SCSKEDLQKK QQIQQQLAPK RSSNKDRHTK  60
VDGRSRRIRM PALCAARVFQ LTRELGHKTD GETIQWLLQQ AEPAILAATG SGTIPASFLA  120
ASASGASSVS QQGASVSLGL HSKINDLRAG VEVANRATWG NFGDNLGRSQ SIWPSIGSGY  180
AQVFDTASNL VSQSSGYVTN FQLQGVGLPT ANMGLLSFTP ILARGAQLPG LQLGLSQDGH  240
GGVIGQIYQQ QQQQQQHHPH QSHEQSDSGA ANVEPVHQHQ QHLQSHSNDN SREQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437974.13e-77hypothetical protein CICLE_v10032374mg
RefseqXP_006484165.12e-77PREDICTED: transcription factor TCP20-like
SwissprotQ9LSD57e-56TCP20_ARATH; Transcription factor TCP20
TrEMBLA0A0J8BC900.0A0A0J8BC90_BETVU; Uncharacterized protein
STRINGPOPTR_0001s33470.12e-71(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.18e-48TCP family protein