PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.9638s0036.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family LBD
Protein Properties Length: 204aa    MW: 22879.9 Da    PI: 5.3174
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.9638s0036.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260110.71e-3451041100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +C+aCkv++r+C ++C+lapyfp ++ ++f+ +h++FG +nv+k+l +l+  +re+a+s+l+yeAear rdP+ G vg+++++q+ql++l
  Bostr.9638s0036.1.p   5 RCSACKVMKRDCDPGCILAPYFPLTNLESFERLHRIFGGENVSKILVNLESPQREIAVSALCYEAEARERDPIFGYVGMFHHYQHQLKNL 94 
                          6***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          ++e++++k+e
  Bostr.9638s0036.1.p  95 EEEINSAKNE 104
                          ******9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.7354105IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-315102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MNPNRCSACK VMKRDCDPGC ILAPYFPLTN LESFERLHRI FGGENVSKIL VNLESPQREI  60
AVSALCYEAE ARERDPIFGY VGMFHHYQHQ LKNLEEEINS AKNELVTIIG PDKVPQYSSH  120
PMPYDFLTTN SSLQSYIEKM EGLNEVQKNE LLQLPIADAP RILNEMFRKK EDEKMCDGHG  180
DAGASTSIVT HGTLPSPGNQ NQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-29610612112LOB family transfactor Ramosa2.1
5ly0_B2e-29610612112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.9638s0036.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_198439.15e-96LOB domain-containing protein 35
SwissprotQ9FFL35e-97LBD35_ARATH; LOB domain-containing protein 35
TrEMBLA0A178UHA21e-94A0A178UHA2_ARATH; LBD35
STRINGBostr.9638s0036.1.p1e-151(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35900.12e-99LOB domain-containing protein 35