PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7903s0134.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 94aa    MW: 10263.8 Da    PI: 9.0205
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7903s0134.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2461.3e-144792150
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50
                         ++ykGVr ++ +g W AeI+dps    + r +lg+f tae+Aa a+  a+
  Bostr.7903s0134.1.p 47 KKYKGVRKKP-SGTWSAEIWDPSL---KVRRWLGTFPTAEMAAHAYNYAA 92
                         69*****999.7*********943...5999***************9886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-74892IPR001471AP2/ERF domain
SMARTSM003803.4E-134893IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-194892IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-134892IPR016177DNA-binding domain
PROSITE profilePS5103218.5184893IPR001471AP2/ERF domain
PRINTSPR003677.2E-74960IPR001471AP2/ERF domain
CDDcd000184.25E-155183No hitNo description
PRINTSPR003677.2E-77187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
ISNFGGDTST CESRLPPLNA GPCPLCSITG CYGCVFPRHE EIIKKEKKYK GVRKKPSGTW  60
SAEIWDPSLK VRRWLGTFPT AEMAAHAYNY AAA*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7903s0134.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5608812e-75AY560881.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g20350) mRNA, complete cds.
GenBankBT0246982e-75BT024698.1 Arabidopsis thaliana At2g20350 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010489052.14e-48PREDICTED: ethylene-responsive transcription factor ERF120-like
RefseqXP_010489053.14e-48PREDICTED: ethylene-responsive transcription factor ERF120-like
SwissprotQ9SK675e-49EF120_ARATH; Ethylene-responsive transcription factor ERF120
TrEMBLA0A178VV222e-46A0A178VV22_ARATH; Uncharacterized protein
STRINGBostr.7903s0134.1.p5e-64(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20350.18e-39ERF family protein