PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s1612.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family LBD
Protein Properties Length: 241aa    MW: 26360.2 Da    PI: 8.1117
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s1612.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.84.5e-302103197
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++ C+l+p++     +++q +++ +++k+FG++ ++++++a+pe +r+++++sl++eA+ r+ +Pv+Gavg+++++++
  Bostr.7867s1612.1.p   2 SCNGCRVLRKGCSETCILRPCLqwiesAESQGHATVFIAKFFGRAGLMSFISAVPELHRPALFQSLLFEACGRTMNPVNGAVGMLWTGNW 91 
                          6*********************9999777889********************************************************** PP

               DUF260  86 qleqlkaelall 97 
                          +++q+++e++l+
  Bostr.7867s1612.1.p  92 HVCQAAVETVLR 103
                          ******998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.2311107IPR004883Lateral organ boundaries, LOB
PfamPF031954.6E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATVFIA KFFGRAGLMS FISAVPELHR  60
PALFQSLLFE ACGRTMNPVN GAVGMLWTGN WHVCQAAVET VLRGGTLRPI SDLLESPSLM  120
ISSDESSAVL HRDVSRNENN QIHHRCFSAS RSKMEIKDSP INRKRLKSDS DLDLQVNHGL  180
TLTASAVPVP FIPPPSFCKA VNGDRPGSPS EESVTTSCWE NGMRGDNNFK GEKKLLNLFV  240
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s1612.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738740.0AB473874.1 Arabidopsis thaliana ASL41 mRNA for ASYMMETRIC LEAVES2-like 41 protein, complete cds.
GenBankAY0721440.0AY072144.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
GenBankAY1229760.0AY122976.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432050.11e-155PREDICTED: LOB domain-containing protein 39-like
SwissprotQ9SZE81e-151LBD39_ARATH; LOB domain-containing protein 39
TrEMBLD7MAL21e-150D7MAL2_ARALL; Uncharacterized protein
STRINGBostr.7867s1612.1.p1e-178(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-154LOB domain-containing protein 39