PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s1319.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bZIP
Protein Properties Length: 151aa    MW: 17089.4 Da    PI: 6.9452
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s1319.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.88.5e-122768546
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46
                         ++ +r+ +NRe+ArrsR +K++ +  L+  v  L++eN +  
  Bostr.7867s1319.1.p 27 RKRKRMLSNRESARRSRMKKQKLLHDLTAQVNHLKKENNEIL 68
                         7889**********************************8655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-92070No hitNo description
SMARTSM003383.5E-172387IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.0252588IPR004827Basic-leucine zipper domain
PfamPF001706.4E-92668IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.56E-122780No hitNo description
CDDcd147021.83E-162878No hitNo description
PROSITE patternPS0003603045IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0080149Biological Processsucrose induced translational repression
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MESSSSGTTS STIPSSSGSE ENLMEQRKRK RMLSNRESAR RSRMKKQKLL HDLTAQVNHL  60
KKENNEILTS VSITTQHYLT VEAENSVLRA QLDELSHRLQ SLNDIIEFKN NGMCLNPLVG  120
LECDDFFVNQ MNMSYMMNQP IMASSDALLY *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12647RKRKRMLSNRESARRSRMKKQK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00470DAPTransfer from AT4G34590Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0539401e-136AF053940.1 Arabidopsis thaliana transcription factor GBF6 (GBF6) mRNA, complete cds.
GenBankCP0026871e-136CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankAY0963961e-136AY096396.1 Arabidopsis thaliana putative bZIP transcription factor ATB2 (At4g34590) mRNA, complete cds.
GenBankAY0639791e-136AY063979.1 Arabidopsis thaliana putative bZIP transcription factor ATB2 (At4g34590) mRNA, complete cds.
GenBankAL1615851e-136AL161585.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 81.
GenBankAL0230941e-136AL023094.2 Arabidopsis thaliana DNA chromosome 4, BAC clone T4L20 (ESSA project).
GenBankZ820431e-136Z82043.1 A.thaliana ATB2 gene.
GenBankX997471e-136X99747.1 A.thaliana ATB2 gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284716.11e-84hypothetical protein CARUB_v10005978mg
RefseqXP_010437587.12e-84PREDICTED: ocs element-binding factor 1-like
TrEMBLR0GL571e-84R0GL57_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.7__631__AT4G34588.13e-81(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.11e-83G-box binding factor 6