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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.7867s1015.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | B3 | ||||||||
Protein Properties | Length: 525aa MW: 59050.3 Da PI: 7.9928 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.5 | 8.6e-12 | 24 | 91 | 18 | 99 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 l +f+ +h + l + d s r+W+vkl ++++ l++GW+eF+ +++ +++D++vFk++g++ f +v+v ++ Bostr.7867s1015.1.p 24 LDAEFLMNHTK------VLLISDASDRVWNVKL--DGGR----LADGWEEFAGEHKFRDRDVLVFKHHGDEVF--HVSVASR 91 55556544443......478889**********..9998....***********************9999999..8887665 PP | |||||||
2 | B3 | 68.8 | 7.4e-22 | 161 | 256 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+++ ++ ++lk++rl lp++f+ + +++k ++ +++e+gr+W++k+ + +sg +++++GWk+F++ n+L +gD + Fkl++ ++ Bostr.7867s1015.1.p 161 FITACVSRYSLKKDRLDLPRNFTVLFgEHQK--ACEIDVMNEQGRRWTMKFAKNISSGVFYIRTGWKHFCSTNELSQGDLCKFKLVQ-NG 247 67778899**************977755554..458***************99999999**************************99.55 PP E..EEEEE- CS B3 90 felvvkvfr 98 +++v+ ++ Bostr.7867s1015.1.p 248 ERPVLWLCP 256 557877775 PP | |||||||
3 | B3 | 69.6 | 4.2e-22 | 289 | 383 | 6 | 99 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 +++ ++g+l+lp +f++e+++kk++ ++l +++gr+W+ +l++ r++s++++l+kGW+e+++ang+k++D++ ++l++ ++++ Bostr.7867s1015.1.p 289 YTPSRDSTGQLSLPVSFTRENDIKKAG--NVILLNQDGRKWSSYLQItglgRGGSEWFYLRKGWREMCEANGVKVNDSFKLELMW-KGAN 375 5678888999************99888..5***************999999999*******************************.9999 PP .EEEEE-S CS B3 92 lvvkvfrk 99 +++k+++k Bostr.7867s1015.1.p 376 PMFKFCSK 383 ******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.898 | 7 | 92 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.2E-12 | 10 | 92 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.63E-11 | 27 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.61E-7 | 28 | 88 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 6.5E-11 | 33 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-18 | 154 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.42E-18 | 160 | 256 | No hit | No description |
SuperFamily | SSF101936 | 7.85E-19 | 161 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.9E-20 | 161 | 256 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-25 | 161 | 258 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 15.072 | 161 | 257 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.9E-18 | 279 | 383 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.32E-16 | 283 | 382 | No hit | No description |
SMART | SM01019 | 8.8E-23 | 284 | 384 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.393 | 284 | 383 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.34E-18 | 286 | 385 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.4E-22 | 287 | 383 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
MVDPPHFSLF QQKFLTGDKP LLTLDAEFLM NHTKVLLISD ASDRVWNVKL DGGRLADGWE 60 EFAGEHKFRD RDVLVFKHHG DEVFHVSVAS RSVSGDMQHA SSSYVDTEDA YLDDDYVDAD 120 DNDDGEDEDD DDDDGAGDKA NCCDSGNKKP EADSSSGHSC FITACVSRYS LKKDRLDLPR 180 NFTVLFGEHQ KACEIDVMNE QGRRWTMKFA KNISSGVFYI RTGWKHFCST NELSQGDLCK 240 FKLVQNGERP VLWLCPQESG NGHKEKRTLD EVSKGKEKKA PSPTVIIKYT PSRDSTGQLS 300 LPVSFTREND IKKAGNVILL NQDGRKWSSY LQITGLGRGG SEWFYLRKGW REMCEANGVK 360 VNDSFKLELM WKGANPMFKF CSKIENHENK GKGNQRTCKK RACVTAPQPR NVKKTPRVGV 420 EGRVNKRISR GPEHQVDEER GRTQVSNRTN TISRKFLRLQ PRSRSVSDQV ASVKQGIIDT 480 LNTVRQCRTE LETSEQNLQA SLLAINALGE RISGISKILS NNLV* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00602 | PBM | Transfer from AT4G31610 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT005002 | 0.0 | BT005002.1 Arabidopsis thaliana clone U20619 unknown protein (At4g31610) mRNA, complete cds. | |||
GenBank | BT003891 | 0.0 | BT003891.1 Arabidopsis thaliana clone RAFL15-10-H22 (R20619) unknown protein (At4g31610) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010438016.1 | 0.0 | PREDICTED: B3 domain-containing protein REM1-like | ||||
Swissprot | Q84J39 | 0.0 | REM1_ARATH; B3 domain-containing protein REM1 | ||||
TrEMBL | D7MB48 | 0.0 | D7MB48_ARALL; Putative uncharacterized protein | ||||
STRING | fgenesh2_kg.7__1010__AT4G31610.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9950 | 17 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31610.1 | 0.0 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.7867s1015.1.p |