PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s0361.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 208aa    MW: 23064.9 Da    PI: 4.8269
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s0361.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-184190255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+GVr++  +g+Wv+e+r+p   +k+ r++lg+f tae+Aa+a++ a+ +l+g
  Bostr.7867s0361.1.p 41 IYRGVRRRN-SGKWVCEVREP---NKKSRIWLGTFQTAEMAARAHDVAAIALRG 90
                         69****888.8******9998...347*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.13E-3240100No hitNo description
PfamPF008471.1E-134090IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2241100IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-3241100IPR001471AP2/ERF domain
PROSITE profilePS5103222.4184198IPR001471AP2/ERF domain
SMARTSM003801.1E-3141104IPR001471AP2/ERF domain
PRINTSPR003671.8E-94253IPR001471AP2/ERF domain
PRINTSPR003671.8E-96480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MFGSDYESPV TSGGDYCPTL ATSCPKKPAG RKKFRETRHP IYRGVRRRNS GKWVCEVREP  60
NKKSRIWLGT FQTAEMAARA HDVAAIALRG RSACLNFADS AWRLRIPEST CAKDIQKAAA  120
EAAVAFQNEM MSDTTTTDHG LDMEETMVDA TVTAEQNDEF YIDEEAMFGM PSLLANMAEG  180
MLLPPPSLQW NNNYDGEGDA DMSLWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1539971271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:16244146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s0361.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:9735350, ECO:0000269|PubMed:9952441}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2074040.0DQ207404.1 Arabis pumila CBF gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438876.11e-140PREDICTED: dehydration-responsive element-binding protein 1B-like
SwissprotQ9SYS61e-126DRE1C_ARATH; Dehydration-responsive element-binding protein 1C
TrEMBLR0F6G11e-133R0F6G1_9BRAS; Uncharacterized protein
STRINGBostr.7867s0361.1.p1e-155(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.11e-125C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Keily J, et al.
    Model selection reveals control of cold signalling by evening-phased components of the plant circadian clock.
    Plant J., 2013. 76(2): p. 247-57
    [PMID:23909712]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Shi H, et al.
    The Cysteine2/Histidine2-Type Transcription Factor ZINC FINGER OF ARABIDOPSIS THALIANA6 Modulates Biotic and Abiotic Stress Responses by Activating Salicylic Acid-Related Genes and C-REPEAT-BINDING FACTOR Genes in Arabidopsis.
    Plant Physiol., 2014. 165(3): p. 1367-1379
    [PMID:24834923]
  4. Oakley CG,Ågren J,Atchison RA,Schemske DW
    QTL mapping of freezing tolerance: links to fitness and adaptive trade-offs.
    Mol. Ecol., 2014. 23(17): p. 4304-15
    [PMID:25039860]
  5. Miyazaki Y,Abe H,Takase T,Kobayashi M,Kiyosue T
    Overexpression of LOV KELCH protein 2 confers dehydration tolerance and is associated with enhanced expression of dehydration-inducible genes in Arabidopsis thaliana.
    Plant Cell Rep., 2015. 34(5): p. 843-52
    [PMID:25627253]
  6. Park S, et al.
    Regulation of the Arabidopsis CBF regulon by a complex low-temperature regulatory network.
    Plant J., 2015. 82(2): p. 193-207
    [PMID:25736223]
  7. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  8. Li Y,Xu B,Du Q,Zhang D
    Transcript abundance patterns of Populus C-repeat binding factor2 orthologs and genetic association of PsCBF2 allelic variation with physiological and biochemical traits in response to abiotic stress.
    Planta, 2015. 242(1): p. 295-312
    [PMID:25916311]
  9. Shi H,Qian Y,Tan DX,Reiter RJ,He C
    Melatonin induces the transcripts of CBF/DREB1s and their involvement in both abiotic and biotic stresses in Arabidopsis.
    J. Pineal Res., 2015. 59(3): p. 334-42
    [PMID:26182834]
  10. Wang CL,Zhang SC,Qi SD,Zheng CC,Wu CA
    Delayed germination of Arabidopsis seeds under chilling stress by overexpressing an abiotic stress inducible GhTPS11.
    Gene, 2016. 575(2 Pt 1): p. 206-12
    [PMID:26325072]
  11. Gehan MA, et al.
    Natural variation in the C-repeat binding factor cold response pathway correlates with local adaptation of Arabidopsis ecotypes.
    Plant J., 2015. 84(4): p. 682-93
    [PMID:26369909]
  12. Su F, et al.
    Burkholderia phytofirmans PsJN reduces impact of freezing temperatures on photosynthesis in Arabidopsis thaliana.
    Front Plant Sci, 2015. 6: p. 810
    [PMID:26483823]
  13. Chan Z, et al.
    RDM4 modulates cold stress resistance in Arabidopsis partially through the CBF-mediated pathway.
    New Phytol., 2016. 209(4): p. 1527-39
    [PMID:26522658]
  14. Wu J, et al.
    Overexpression of Muscadinia rotundifolia CBF2 gene enhances biotic and abiotic stress tolerance in Arabidopsis.
    Protoplasma, 2017. 254(1): p. 239-251
    [PMID:26795343]
  15. Gao S, et al.
    A cotton miRNA is involved in regulation of plant response to salt stress.
    Sci Rep, 2016. 6: p. 19736
    [PMID:26813144]
  16. Shi H,Wei Y,He C
    Melatonin-induced CBF/DREB1s are essential for diurnal change of disease resistance and CCA1 expression in Arabidopsis.
    Plant Physiol. Biochem., 2016. 100: p. 150-155
    [PMID:26828406]
  17. Norén L, et al.
    Circadian and Plastid Signaling Pathways Are Integrated to Ensure Correct Expression of the CBF and COR Genes during Photoperiodic Growth.
    Plant Physiol., 2016. 171(2): p. 1392-406
    [PMID:27208227]
  18. Zhao C, et al.
    Mutational Evidence for the Critical Role of CBF Transcription Factors in Cold Acclimation in Arabidopsis.
    Plant Physiol., 2016. 171(4): p. 2744-59
    [PMID:27252305]
  19. Jia Y, et al.
    The cbfs triple mutants reveal the essential functions of CBFs in cold acclimation and allow the definition of CBF regulons in Arabidopsis.
    New Phytol., 2016. 212(2): p. 345-53
    [PMID:27353960]
  20. Zhao C,Zhu JK
    The broad roles of CBF genes: From development to abiotic stress.
    Plant Signal Behav, 2016. 11(8): p. e1215794
    [PMID:27472659]
  21. Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T
    ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.
    Plant Cell Environ., 2017. 40(1): p. 108-120
    [PMID:27723941]
  22. Shi Y, et al.
    The precise regulation of different COR genes by individual CBF transcription factors in Arabidopsis thaliana.
    J Integr Plant Biol, 2017. 59(2): p. 118-133
    [PMID:28009483]
  23. Li H, et al.
    BZR1 Positively Regulates Freezing Tolerance via CBF-Dependent and CBF-Independent Pathways in Arabidopsis.
    Mol Plant, 2017. 10(4): p. 545-559
    [PMID:28089951]
  24. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  25. Li A, et al.
    Transcriptome Profiling Reveals the Negative Regulation of Multiple Plant Hormone Signaling Pathways Elicited by Overexpression of C-Repeat Binding Factors.
    Front Plant Sci, 2017. 8: p. 1647
    [PMID:28983312]
  26. Cho S, et al.
    Accession-Dependent CBF Gene Deletion by CRISPR/Cas System in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1910
    [PMID:29163623]
  27. Beine-Golovchuk O, et al.
    Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs.
    Plant Physiol., 2018. 176(3): p. 2251-2276
    [PMID:29382692]
  28. Park S,Gilmour SJ,Grumet R,Thomashow MF
    CBF-dependent and CBF-independent regulatory pathways contribute to the differences in freezing tolerance and cold-regulated gene expression of two Arabidopsis ecotypes locally adapted to sites in Sweden and Italy.
    PLoS ONE, 2018. 13(12): p. e0207723
    [PMID:30517145]