PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7128s0526.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 183aa    MW: 20747.8 Da    PI: 4.7911
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7128s0526.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-191061156
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         s+ykGVr +k +g+Wv+eIr p++   r r++lg+++t+e+Aa+a +aa  +l+g+
  Bostr.7128s0526.1.p 10 SKYKGVRKRK-WGKWVSEIRFPNS---RERIWLGSYDTPEKAARAFDAALYCLRGN 61
                         89*****999.**********933...5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.38E-281070No hitNo description
SuperFamilySSF541713.92E-211069IPR016177DNA-binding domain
PfamPF008474.4E-121060IPR001471AP2/ERF domain
SMARTSM003801.1E-311174IPR001471AP2/ERF domain
PROSITE profilePS5103222.2731168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-291169IPR001471AP2/ERF domain
PRINTSPR003671.0E-91223IPR001471AP2/ERF domain
PRINTSPR003671.0E-93450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MEGSSSSMQS KYKGVRKRKW GKWVSEIRFP NSRERIWLGS YDTPEKAARA FDAALYCLRG  60
NDAKFNFPNN PPVINGGRNL SRSEIREAAA RFANSEENSS VRAGYEIRQE CTSNSMDIDS  120
EFLSMLPTVG SGNFASEFGL FPGFDDFSDE YSGDRFREQL SPTQDYYHGE ENYDGSMILW  180
NF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-169691273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11218KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7128s0526.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0083900.0AY008390.1 Arabidopsis thaliana ARF11/IAA22 gene, complete cds.
GenBankBT0061910.0BT006191.1 Arabidopsis thaliana clone C00087 (K) putative AP2 domain transcription factor (At1g19210) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT29M80.0AC069143.3 Sequence of BAC T29M8 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306071.11e-116ethylene-responsive transcription factor ERF017
SwissprotQ84QC21e-117ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLR0I9A01e-114R0I9A0_9BRAS; Uncharacterized protein
STRINGBostr.7128s0526.1.p1e-132(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-119ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]