PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7128s0222.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family AP2
Protein Properties Length: 342aa    MW: 38756.8 Da    PI: 5.6795
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7128s0222.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.71.1e-1156112155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s ++GV++++++gr++A+++d  s+n  ++k+ + g ++ ++ Aa+a++ a++k++g
  Bostr.7128s0222.1.p  56 SVHRGVTRHRWTGRYEAHLWDkNSWNEtQSKKGRQGAYDEEDAAARAYDLAALKYWG 112
                          689******************88889998888888*****99*************98 PP

2AP2513.5e-16155206155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV  ++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Bostr.7128s0222.1.p 155 SKYRGVAKHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDIAAIEYRG 206
                          89****************99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.77E-1456121IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-1157120IPR001471AP2/ERF domain
SMARTSM003806.5E-1857126IPR001471AP2/ERF domain
PfamPF008474.1E-857112IPR001471AP2/ERF domain
PROSITE profilePS5103218.51857120IPR001471AP2/ERF domain
PRINTSPR003673.0E-55869IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-17155216IPR016177DNA-binding domain
CDDcd000181.47E-14155216No hitNo description
PfamPF008473.8E-11155206IPR001471AP2/ERF domain
PROSITE profilePS5103217.859156214IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-17156214IPR001471AP2/ERF domain
SMARTSM003801.4E-25156220IPR001471AP2/ERF domain
PRINTSPR003673.0E-5196216IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MYIAVEVSPV MEEITRRSKK TSVENETGDE LAGSVVIKAK RKRQSQPREA PPQRSSVHRG  60
VTRHRWTGRY EAHLWDKNSW NETQSKKGRQ GAYDEEDAAA RAYDLAALKY WGRDTILNFP  120
LCNYEEDIKE MESQSKEEYI GSLRRKSSGF SRGVSKYRGV AKHHHNGRWE ARIGRVFGNK  180
YLYLGTYATQ EEAAIAYDIA AIEYRGLNAV TNFDISRYLK LPAPENHIDA ANHPLEIPQS  240
DPSPFINPNH ESELSQSQSS TDDNDDRKTK LLKSSPLNAE EVIGPSTPPE IVPPRRSFPE  300
DIQTYFGCQN SGKLTTEEDD VIFGDLDSFL TPDFYSELND C*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7128s0222.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0459150.0AY045915.1 Arabidopsis thaliana unknown protein (At1g16060) mRNA, complete cds.
GenBankAY1338800.0AY133880.1 Arabidopsis thaliana clone U10081 unknown protein (At1g16060) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501478.20.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN40.0AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1J3E8T90.0A0A1J3E8T9_NOCCA; AP2-like ethylene-responsive transcription factor (Fragment)
TrEMBLA0A1J3HBM00.0A0A1J3HBM0_NOCCA; AP2-like ethylene-responsive transcription factor
STRINGBostr.7128s0222.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.10.0ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]