PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.6864s0247.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family LBD
Protein Properties Length: 243aa    MW: 26316.8 Da    PI: 7.6002
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.6864s0247.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.63.1e-312103197
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++++pe + +++++sl+yeA+ r+ +Pv+Gavg+++++++
  Bostr.6864s0247.1.p   2 SCNGCRVLRKGCSENCILRPCIqwiesPEAQGHATVFVAKFFGRAGLMSFISTVPEPQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNW 91 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelall 97 
                          +++q+++e++l+
  Bostr.6864s0247.1.p  92 NICQAAVETVLR 103
                          ******999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.3821107IPR004883Lateral organ boundaries, LOB
PfamPF031958.8E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISTVPEPQC  60
PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNICQAAVET VLRGGSLKPI PELLNGGGFA  120
GFPSPTSDEA SEICTEMLNL RKDDSSDRNI YHHCRFSSSR SRSTASPPKR KRLTSEQPSS  180
ELDLSPIPTF PIITAPFKED TPSMYSEESV TTVSFRDNTA GDRYVRGGGR GGETAKLLNL  240
FA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.6864s0247.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0857610.0AY085761.1 Arabidopsis thaliana clone 17840 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291765.11e-161LOB domain-containing protein 38 isoform X1
RefseqXP_023638239.11e-161LOB domain-containing protein 38 isoform X2
SwissprotQ9SN231e-151LBD38_ARATH; LOB domain-containing protein 38
TrEMBLR0HL691e-160R0HL69_9BRAS; Uncharacterized protein
STRINGBostr.6864s0247.1.p1e-179(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-135LOB domain-containing protein 38