PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.6251s0027.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family E2F/DP
Protein Properties Length: 291aa    MW: 32842.2 Da    PI: 7.2383
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.6251s0027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP74.88.6e-2449131371
              E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          + +Lr+++ +   +++k e+ +i+t++eva+e++s+                 ++kn+rRR+YD+lNV++al++i++ +k+eirwkg
  Bostr.6251s0027.1.p  49 GGGLRQFSVM---VCQKLEAkKITTYKEVADEIISDfatikqnaekplneneyNEKNIRRRVYDALNVFMALDIIAR-DKKEIRWKG 131
                          5799999999...****9999********************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094045.7E-995289IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.107.1E-3644135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.4E-2847131IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023198.7E-2050131IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.33E-1850132IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF1440741.88E-38138280No hitNo description
CDDcd144586.87E-29138239IPR014889Transcription factor DP, C-terminal
SMARTSM011381.1E-52138290IPR014889Transcription factor DP, C-terminal
PfamPF087812.1E-33139259IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEMDLFDTPE KQRQHPSVSL EKTPVRRKLI VDEDADIGSE KKGQSRTAGG GLRQFSVMVC  60
QKLEAKKITT YKEVADEIIS DFATIKQNAE KPLNENEYNE KNIRRRVYDA LNVFMALDII  120
ARDKKEIRWK GLPITCKKDV EEVKMDRNKV MNSVQKKAAF LKELREKVSS LESLISRNQE  180
MVVKTQGPAE GFTLPFILLE TNPHAVVEIE ISEDMQLVHL DFNSTPFSVH DDTYILKLMQ  240
EQKQQQNRVS SSSSTHHQSQ HSSAHSSSSS CIASGTSGPV CWNSGSIDTR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-2549133990PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0052860.0BT005286.1 Arabidopsis thaliana At5g02470 mRNA, complete cds.
GenBankAK1171350.0AK117135.1 Arabidopsis thaliana At5g02470 mRNA for putative DP-2 transcription factor, complete cds, clone: RAFL16-67-D16.
GenBankAJ3190270.0AJ319027.1 Arabidopsis thaliana partial mRNA for E2F dimerisation partner protein (dp2a gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873053.10.0hypothetical protein ARALYDRAFT_487025
RefseqXP_010423860.10.0PREDICTED: transcription factor-like protein DPA
RefseqXP_010452086.10.0PREDICTED: transcription factor-like protein DPA
RefseqXP_010452087.10.0PREDICTED: transcription factor-like protein DPA
RefseqXP_010452088.10.0PREDICTED: transcription factor-like protein DPA
RefseqXP_010452089.10.0PREDICTED: transcription factor-like protein DPA
SwissprotQ9FNY30.0DPA_ARATH; Transcription factor-like protein DPA
TrEMBLD7M7T40.0D7M7T4_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.6__159__AT5G02470.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116412233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.30.0Transcription factor DP