PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.5325s0047.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 194aa    MW: 21247.2 Da    PI: 5.3555
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.5325s0047.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.7e-174494155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +++Aaka++ a+ +l+g
  Bostr.5325s0047.1.p 44 PVYHGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPQMAAKAYDVAAFCLKG 94
                         68*****887.**********843...6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-114494IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-2945103IPR001471AP2/ERF domain
PROSITE profilePS5103222.73445102IPR001471AP2/ERF domain
SMARTSM003803.8E-3245108IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-2045104IPR016177DNA-binding domain
PRINTSPR003674.7E-124657IPR001471AP2/ERF domain
CDDcd000183.62E-2946103No hitNo description
PRINTSPR003674.7E-1284104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSQQRMKLSP PLPPLANNEP TATASAVKSC GGGGREISST TRHPVYHGVR KRRWGKWVSE  60
IREPRKKSRI WLGSFPVPQM AAKAYDVAAF CLKGRKALLN FPDEIDDLPR PPTCTARDIQ  120
VAAAKAANAV KIIEMGDDDV AEIDDGDDFW EGIELPELVM TGGGWSPEPF VAGDDATWLV  180
DGDLYQYQFK SCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1733106476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.5325s0047.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0865070.0AY086507.1 Arabidopsis thaliana clone 25524 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305645.11e-119ethylene-responsive transcription factor ERF023
SwissprotQ1ECI21e-116ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLR0IN741e-117R0IN74_9BRAS; Uncharacterized protein
STRINGBostr.5325s0047.1.p1e-141(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76592439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.11e-107ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]