PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3877s0058.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 151aa    MW: 17337.1 Da    PI: 10.3394
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3877s0058.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.9e-173584255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +ykG+r +k +g+WvAeIr+ps+   r r++lg++ ta  Aa+a++ a+ +l+g
  Bostr.3877s0058.1.p 35 RYKGIRMRK-WGKWVAEIREPSK---RSRIWLGSYKTAVAAARAYDTAAVYLRG 84
                         8******99.**********976...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.99E-183493No hitNo description
SuperFamilySSF541711.05E-203593IPR016177DNA-binding domain
PROSITE profilePS5103222.3263592IPR001471AP2/ERF domain
PfamPF008472.0E-93584IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-293593IPR001471AP2/ERF domain
SMARTSM003804.3E-353598IPR001471AP2/ERF domain
PRINTSPR003671.2E-83647IPR001471AP2/ERF domain
PRINTSPR003671.2E-85874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MEIEYKRKQD FPMVKEELVM NEKPKRNLMI PKEKRYKGIR MRKWGKWVAE IREPSKRSRI  60
WLGSYKTAVA AARAYDTAAV YLRGRSTRVN FPEEVFKDGN GFEGVGGDMS ATFIRQKAAE  120
VGARVDAELW LDNNMVAKLD MNKLPEAYGL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-153295266ATERF1
3gcc_A2e-153295266ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00430DAPTransfer from AT4G06746Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3877s0058.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438722.11e-87PREDICTED: ethylene-responsive transcription factor RAP2-9
SwissprotQ8W3M32e-78RAP29_ARATH; Ethylene-responsive transcription factor RAP2-9
TrEMBLA0A178U6512e-75A0A178U651_ARATH; RAP2.9
STRINGBostr.3877s0058.1.p1e-106(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06746.11e-68related to AP2 9
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]