PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3148s0222.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 230aa    MW: 26251.1 Da    PI: 10.3699
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3148s0222.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.1e-16130217196
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k +++s+v+   +l lp +f+++   k  ++  +tl de+g+++e  +i ++++    l++GW +F+ a++L  gD++vF+l++ + f
  Bostr.3148s0222.1.p 130 FVKSMLQSHVSGGFWLGLPVHFCRSQLRK--QDCVITLIDEEGEEFETIYIAKRTG----LSGGWMGFAVAHNLAYGDTLVFELVRPTAF 213
                          89*********************988555..4558***************555555....************************987888 PP

                          ..EEEE CS
                   B3  91 elvvkv 96 
                            +v +
  Bostr.3148s0222.1.p 214 --KVYI 217
                          ..5555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-22124220IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-18125219IPR015300DNA-binding pseudobarrel domain
CDDcd100173.60E-22129219No hitNo description
PROSITE profilePS5086311.801130221IPR003340B3 DNA binding domain
PfamPF023621.7E-13130217IPR003340B3 DNA binding domain
SMARTSM010195.6E-22130221IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVVAKQSNYE EFRMKRVEEN KKRMEALNLT KLSQNLNPTS VKTSPMKKRC IPRTPEKQMV  60
IVRRSSRLSN SSSTPVYREV DLQRVQIRRR VVSKRRDLSN RVYVSEEIRD EAISRAEKFQ  120
ADLGSDYSSF VKSMLQSHVS GGFWLGLPVH FCRSQLRKQD CVITLIDEEG EEFETIYIAK  180
RTGLSGGWMG FAVAHNLAYG DTLVFELVRP TAFKVYITRV GSSGESSKI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026883e-61CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankAB0076473e-61AB007647.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJB21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481961.11e-142PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
SwissprotQ9FMZ41e-120Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLD7MRH41e-126D7MRH4_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh1_pm.C_scaffold_80004731e-125(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-121B3 family protein