PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.30057s0082.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family TCP
Protein Properties Length: 409aa    MW: 43142.2 Da    PI: 6.8599
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.30057s0082.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP130.41.7e-40522172121
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg. 88 
                           ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlq a+pai ++tgt++++a+++  ++s +ss+s+ s++ 
  Bostr.30057s0082.1.p  52 TTTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQHAEPAIVAATGTGTIPANFStLSVSLRSSGSTLSAPp 140
                           789******************************************************************99988888888888555556 PP

                   TCP  89 ............................................kaaksaakskksqksaasalnlakesrakarar 121
                                                                       ++ + +++++++q++ ++ ++  + sr++ r+ 
  Bostr.30057s0082.1.p 141 skslplygalglthhhhhhqhqfdeqgggggafaahttpllgfhHHLQHQHHHHQNQAPVETISDGENFSRKRYRSV 217
                           66677777777777777777888888899999888888777775444444455555555555555555555555544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-4057225IPR005333Transcription factor, TCP
PROSITE profilePS5136927.98558112IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDLSDIRNND GAATTGGGAR QLVDASLTIV PRSTPLEDST LATTSSTAAA ATTTKRSTKD  60
RHTKVDGRGR RIRMPALCAA RVFQLTRELG HKSDGETIEW LLQHAEPAIV AATGTGTIPA  120
NFSTLSVSLR SSGSTLSAPP SKSLPLYGAL GLTHHHHHHQ HQFDEQGGGG GAFAAHTTPL  180
LGFHHHLQHQ HHHHQNQAPV ETISDGENFS RKRYRSVDLS KENDDRKQNE SKSLKESETP  240
DPAAPPMWAV APTSRSSGGN TLWMLPVPTT AGNQMDSSSN NTTTAGHRAP MWPFVNSAGG  300
AGGGAGGGAG AATHFMAGTG FSFPMDQYRG SPLQLGSFVA QPQPTQNLGL SMPDSNLGML  360
AALNVAYSRG GNANANAEQA NNAVEHQEKP QQSDHDEDSR DDNSNSSE*
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.30057s0082.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0791310.0AC079131.4 Arabidopsis thaliana chromosome 1 BAC T18I24 genomic sequence, complete sequence.
GenBankAC0796040.0AC079604.5 Arabidopsis thaliana chromosome 1 BAC T15M6 genomic sequence, complete sequence.
GenBankAY0813440.0AY081344.1 Arabidopsis thaliana auxin-induced basic helix-loop-helix transcription factor, putative (At1g58100) mRNA, complete cds.
GenBankBT0084930.0BT008493.1 Arabidopsis thaliana At1g58100 gene, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020891334.10.0transcription factor TCP8
SwissprotQ9C5180.0TCP8_ARATH; Transcription factor TCP8
TrEMBLD7KY840.0D7KY84_ARALL; Uncharacterized protein (Fragment)
STRINGBostr.30057s0082.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-163TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]