PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.29827s0238.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 183aa    MW: 19445.8 Da    PI: 10.2401
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.29827s0238.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-183483255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           y+GVr +  +g+Wv+eIr+p++   + r++lg+f ++e+Aa+a++ a+++++g
  Bostr.29827s0238.1.p 34 VYRGVRKRN-WGKWVSEIREPKK---KSRIWLGTFPSPEMAARAHDVAALSIKG 83
                          59****887.**********854...6***********************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.3E-343497IPR001471AP2/ERF domain
PfamPF008471.6E-123483IPR001471AP2/ERF domain
PROSITE profilePS5103223.633491IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-213492IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.7E-323492IPR001471AP2/ERF domain
PRINTSPR003673.8E-103546IPR001471AP2/ERF domain
CDDcd000182.72E-323593No hitNo description
PRINTSPR003673.8E-105773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MIASKTTTPK TSSASQEVKE EKTKPVRDSG KHQVYRGVRK RNWGKWVSEI REPKKKSRIW  60
LGTFPSPEMA ARAHDVAALS IKGASAILNF PDLAGSFPRP SSLSPRDIQA AALKAAHMEI  120
MTTSQSSSSF AFSSSQSSSS LESLVSSSEP GSEELGEIVE LPSLGSSYDG STQLGLGSSR  180
TV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1931911172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00529DAPTransfer from AT5G25810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.29827s0238.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054051e-138AC005405.1 BAC F18A17 from chromosome V containing TINY at 60.5 cM, complete sequence.
GenBankAY5608551e-138AY560855.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g25810) mRNA, complete cds.
GenBankBT0249231e-138BT024923.1 Arabidopsis thaliana At5g25810 mRNA, complete cds.
GenBankCP0026881e-138CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankX946981e-138X94698.1 A.thaliana TINY mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010493837.12e-91PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ391272e-82TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A3P5YWJ77e-81A0A3P5YWJ7_BRACM; Uncharacterized protein
STRINGBostr.29827s0238.1.p1e-127(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.11e-73ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]