PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.29827s0156.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family M-type_MADS
Protein Properties Length: 226aa    MW: 25913.1 Da    PI: 10.3683
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.29827s0156.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF595.9e-191049241
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                          +ien++ r+ tf kRr+g+lKKA+EL +LCd+ ++vi+ s
  Bostr.29827s0156.1.p 10 FIENETARKSTFKKRRKGVLKKAHELATLCDVPICVIVNS 49
                          8************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.68149IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-25160IPR002100Transcription factor, MADS-box
CDDcd002663.69E-25285No hitNo description
SuperFamilySSF554551.01E-24295IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-10323IPR002100Transcription factor, MADS-box
PfamPF003194.6E-181049IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-102338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MTRKKVKMTF IENETARKST FKKRRKGVLK KAHELATLCD VPICVIVNSA YESNPVVWPS  60
RETANKVVSQ WRMMSVMDKT KKMVNQETFL QQRITKATES WKKLRKENKE LEMKNIMFDC  120
LSGKTSVSRV EKSDLRDFCC VIEQYLKDIN RRMELLKRND ESSSSLVSAA AATTNPPLAT  180
TSSVMPMVEM GSSSVGFYDR IRDQIQNTLN MKHTNTDLDL NKKQL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKMTFIENETARKSTFKKRR
22125KKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.29827s0156.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8306900.0AB830690.1 Turritis glabra AGL35 gene for agamous-like MADS-box protein AGL35, partial cds, isolate: e058.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010421527.11e-133PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-55AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLS6B3Z01e-135S6B3Z0_TURGL; Agamous-like MADS-box protein AGL35
STRINGBostr.29827s0156.1.p1e-166(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.11e-113M-type_MADS family protein
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]