PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2902s0151.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 265aa    MW: 30135.2 Da    PI: 9.4411
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2902s0151.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003597119223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +C+ C+++++++ +L  H +  H
  Bostr.2902s0151.1.p  97 SCSVCSRVYPTSRLLSIHVSEaH 119
                          6*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.196994IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807194IPR007087Zinc finger, C2H2
SMARTSM003555.496119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098119IPR007087Zinc finger, C2H2
SMARTSM003550.091134159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAMGMAVDTI SELPFPVWNP IRRRFPPDSP FFASGNVERE LLAKQMALDL TEDEINHLQK  60
IVETESRRIS CPITGCPERL KSLDHFEDHY NARHTASCSV CSRVYPTSRL LSIHVSEAHD  120
SFFQAKVARG YDMYECLVEG CGLKFKNYKA RHRHLVDKHK FPTTFEFFKK TQLSKKRREK  180
LQRQHVSKLK HKQDKEETSS DAMEVEDKAS VDGLVSALST LTTSDTTPSN VSFGRRHGRG  240
LTFVPRSVHR EKRIESSSAP GPTN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179KKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2902s0151.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0031310.0BT003131.1 Arabidopsis thaliana At5g14140 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010420037.10.0PREDICTED: zinc finger protein 511
TrEMBLA0A178UDE40.0A0A178UDE4_ARATH; Uncharacterized protein
TrEMBLQ0WRF40.0Q0WRF4_ARATH; Nucleic acid binding / zinc ion binding protein
STRINGBostr.2902s0151.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99712632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-161zinc ion binding;nucleic acid binding;zinc ion binding