PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2902s0126.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 211aa    MW: 23501.9 Da    PI: 5.9251
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2902s0126.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-191867255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++ GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g
  Bostr.2902s0126.1.p 18 RFLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRG 67
                         678******.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.85E-311774No hitNo description
SMARTSM003807.1E-341881IPR001471AP2/ERF domain
PROSITE profilePS5103220.7451875IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-211976IPR016177DNA-binding domain
PfamPF008473.6E-121967IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-291975IPR001471AP2/ERF domain
PRINTSPR003672.3E-81930IPR001471AP2/ERF domain
PRINTSPR003672.3E-84157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MNTKSSKTKK KQEEVGTRFL GVRRRPWGRY AAEIRDPTTK ERHWLGTFDT AEEAALAYDR  60
AARSMRGTRA RTNFVYSDMP PSSSVTSIVS PDDPPPPPPP PAPPSDDPVD YMMMFNQYSS  120
TDSPMLQPHC DQVDSYMFGG SQSSTSYCHS NNSSNELPPL PSDLSNSCYS HPQWTWSGDD  180
YSAEYVHSPM FSRMPPVSDS LPQGFNHFGS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-201974359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-191674362ATERF1
3gcc_A1e-191674362ATERF1
5wx9_A6e-1918741471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2902s0126.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By imbibition. {ECO:0000269|PubMed:16339853}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052300.0AB005230.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAC12.
GenBankAY5608520.0AY560852.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g13910) mRNA, complete cds.
GenBankBT0249190.0BT024919.1 Arabidopsis thaliana At5g13910 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453495.11e-133PREDICTED: ethylene-responsive transcription factor LEP
SwissprotQ9M6441e-130LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBLR0HAG61e-131R0HAG6_9BRAS; Uncharacterized protein
STRINGBostr.2902s0126.1.p1e-154(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.19e-93ERF family protein
Publications ? help Back to Top
  1. van der Graaff E,Nussbaumer C,Keller B
    The Arabidopsis thaliana rlp mutations revert the ectopic leaf blade formation conferred by activation tagging of the LEP gene.
    Mol. Genet. Genomics, 2003. 270(3): p. 243-52
    [PMID:12910411]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]