PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.28625s0062.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 235aa    MW: 25819.7 Da    PI: 5.1706
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.28625s0062.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.5e-1755103355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr ++ +g+Wv+eIr p++   ++r++lg+f ta++Aa+a++ a++ ++g
  Bostr.28625s0062.1.p  55 YRGVRMRS-WGKWVSEIRQPRK---KTRIWLGTFVTADMAARAHDVAALTIKG 103
                           9****998.**********843...6**********************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-1153103IPR001471AP2/ERF domain
SMARTSM003808.1E-3554117IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-2054112IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.4E-3154112IPR001471AP2/ERF domain
PROSITE profilePS5103222.41854111IPR001471AP2/ERF domain
PRINTSPR003673.4E-105566IPR001471AP2/ERF domain
CDDcd000182.29E-3155113No hitNo description
PRINTSPR003673.4E-107793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MTSLNSSSSP SSSSDQSDAT TTTSTHLSKG TPPRKNTRKR RRVFSSSSSP KHPAYRGVRM  60
RSWGKWVSEI RQPRKKTRIW LGTFVTADMA ARAHDVAALT IKGSSAVINF PELASLFPRP  120
LSSSPQDIQA AAAEAAAMVV EGKLSETETS PEAPPSSDSS YVAAVSEEER LEEIVELPNI  180
EEGRYDGNVT SRADMGYSEP LDCWVYPPVM DFYEEISEFN LVELWSFPHT ELIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1749111972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13741RKRRR
23842KRRRV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00362DAPTransfer from AT3G16280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.28625s0062.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV LIGHT. {ECO:0000269|PubMed:16307362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0230460.0AB023046.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYA6.
GenBankATAC0016450.0AC001645.1 Arabidopsis thaliana chromosome III BAC T02O04 genomic sequence, complete sequence.
GenBankAY5608460.0AY560846.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At3g16280) mRNA, complete cds.
GenBankAY9951520.0AY995152.1 Arabidopsis thaliana AP2/EREBP transcription factor family protein mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406852.11e-114ethylene-responsive transcription factor ERF036
SwissprotQ9LU181e-107ERF36_ARATH; Ethylene-responsive transcription factor ERF036
TrEMBLV4LCY01e-113V4LCY0_EUTSA; Uncharacterized protein
STRINGBostr.28625s0062.1.p1e-171(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150411618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16280.13e-84ERF family protein