PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26959s0198.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family LBD
Protein Properties Length: 234aa    MW: 25748.5 Da    PI: 8.1654
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26959s0198.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.52.8e-304106198
                DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                           +C++C+vlr++C+++C ++p++     +++q++++ +++k++G++ +++ll++ p++ r+++++sl+yeA+ r+ +P+yG+vg++++++
  Bostr.26959s0198.1.p   4 SCNGCRVLRKGCSENCSIRPCLqwiksAESQANATVFLAKFYGRAGLMNLLNTGPDHLRPAIFRSLLYEACGRIMNPIYGSVGLLWSGN 92 
                           6*********************9999777889********************************************************* PP

                DUF260  85 qqleqlkaelallk 98 
                           ++l+q+++e+++++
  Bostr.26959s0198.1.p  93 WHLCQAAVEAVMRG 106
                           ********998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.0493109IPR004883Lateral organ boundaries, LOB
PfamPF031957.9E-254104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLNTGPDH  60
LRPAIFRSLL YEACGRIMNP IYGSVGLLWS GNWHLCQAAV EAVMRGSPVT PIACDAAVTS  120
QAPPFNNKLF DIRHVSSKDE NVKRRSRGAC KEERNVRSLS HESSLSHESP VSSEETTTEE  180
PKTWIGLELT LGLEPLARGN HVVVPMKKRK LERCGTSEDE DTCKIELGLV CGE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26959s0198.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738700.0AB473870.1 Arabidopsis thaliana ASL37 mRNA for ASYMMETRIC LEAVES2-like 37 protein, complete cds.
GenBankBT0109430.0BT010943.1 Arabidopsis thaliana At1g67100 gene, complete cds.
GenBankBT0116500.0BT011650.1 Arabidopsis thaliana At1g67100 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415261.11e-156PREDICTED: LOB domain-containing protein 40-like isoform X2
SwissprotQ9ZW961e-153LBD40_ARATH; LOB domain-containing protein 40
TrEMBLD7KUZ41e-154D7KUZ4_ARALL; Predicted protein
STRINGBostr.26959s0198.1.p1e-173(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152481518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.11e-149LOB domain-containing protein 40