PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26959s0035.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 331aa    MW: 36111.1 Da    PI: 4.4353
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26959s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.8e-17114160252
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                           +  GVr++k +g+W+AeIr+p     + +r +lg+f+t eeAaka++  + +
  Bostr.26959s0035.1.p 114 KPVGVRQRK-WGKWAAEIRHPI----TkTRTWLGTFDTLEEAAKAYDVKKIE 160
                           789*****9.**********72....36*******************87765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.28E-22113161No hitNo description
SMARTSM003807.3E-17114168IPR001471AP2/ERF domain
PROSITE profilePS5103219.085114171IPR001471AP2/ERF domain
PfamPF008472.6E-11114161IPR001471AP2/ERF domain
PRINTSPR003671.8E-7115126IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-16116161IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-21117161IPR001471AP2/ERF domain
PRINTSPR003671.8E-7137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MVEVRKEQSL SGISGEMKKQ KRNTLSSHPQ QTQPLRKVRI IVNDPYATDD SSSDEEEPKV  60
PKPRKMKRIV REINFPSMEA SEQPSESSSQ DSTKTVSKKA ASASPARPRL LTKKPVGVRQ  120
RKWGKWAAEI RHPITKTRTW LGTFDTLEEA AKAYDVKKIE FDALVASVSV SGNASTKPAV  180
SSSETSQCSR SSPVAPVEQD DTSASALTCV NPDDVSKEET VTPTPNATGG NKEVLFDFDF  240
TDLQIPDLGF FAEGPNGHDL DFDCFLNDDQ LDGFGLLDDI QGFEDDGPSE LPDFDFADVE  300
ELELADSSFG FLDQIAPLNI GCPLKSFAAS *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26959s0035.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301554.10.0ethylene-responsive transcription factor ERF118
RefseqXP_023644019.10.0ethylene-responsive transcription factor ERF118
SwissprotQ9CA271e-176EF118_ARATH; Ethylene-responsive transcription factor ERF118
TrEMBLR0GF660.0R0GF66_9BRAS; Uncharacterized protein
STRINGBostr.26959s0035.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-138ERF family protein
Publications ? help Back to Top
  1. Tran MK,Schultz CJ,Baumann U
    Conserved upstream open reading frames in higher plants.
    BMC Genomics, 2008. 9: p. 361
    [PMID:18667093]