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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.26833s0517.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | AP2 | ||||||||
Protein Properties | Length: 553aa MW: 59845.6 Da PI: 7.621 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.9 | 3.3e-15 | 200 | 259 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g Bostr.26833s0517.1.p 200 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 259 57*******************666664477446*************************98 PP | |||||||
2 | AP2 | 46.3 | 1.1e-14 | 304 | 353 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Bostr.26833s0517.1.p 304 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 353 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.2E-12 | 200 | 259 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.61E-22 | 200 | 269 | No hit | No description |
SuperFamily | SSF54171 | 2.55E-17 | 200 | 269 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.6E-29 | 201 | 273 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.243 | 201 | 267 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.4E-16 | 201 | 268 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-6 | 202 | 213 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-18 | 302 | 363 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.11E-25 | 302 | 363 | No hit | No description |
SMART | SM00380 | 3.7E-33 | 303 | 367 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.203 | 303 | 361 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-18 | 303 | 361 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-9 | 304 | 353 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-6 | 343 | 363 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description |