PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0517.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family AP2
Protein Properties Length: 553aa    MW: 59845.6 Da    PI: 7.621
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0517.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.3e-15200259155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Bostr.26833s0517.1.p 200 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 259
                           57*******************666664477446*************************98 PP
2AP246.31.1e-14304353355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Bostr.26833s0517.1.p 304 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 353
                           9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-12200259IPR001471AP2/ERF domain
CDDcd000183.61E-22200269No hitNo description
SuperFamilySSF541712.55E-17200269IPR016177DNA-binding domain
SMARTSM003802.6E-29201273IPR001471AP2/ERF domain
PROSITE profilePS5103219.243201267IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-16201268IPR001471AP2/ERF domain
PRINTSPR003673.0E-6202213IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18302363IPR016177DNA-binding domain
CDDcd000188.11E-25302363No hitNo description
SMARTSM003803.7E-33303367IPR001471AP2/ERF domain
PROSITE profilePS5103219.203303361IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-18303361IPR001471AP2/ERF domain
PfamPF008471.5E-9304353IPR001471AP2/ERF domain
PRINTSPR003673.0E-6343363IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description