PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0482.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 296aa    MW: 33960.1 Da    PI: 5.0598
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0482.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.81.1e-1913104199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                           f+k++ +s+ ++++ lv+p+ + + + ++   ++t +l+ ++g+ W+vk   + ++++ + +++GW++Fvk+ngL ++Df++F++dg++
  Bostr.26833s0482.2.p  13 FLKIF-NSHEHSQH-LVIPRGYNKYYPNP--LPQTAVLKKPEGNFWTVKW--KISKEEtISFQEGWEKFVKDNGLIDRDFLLFTYDGSR 95 
                           66666.77777777.*******9666644..889****************..555544499************************9988 PP

                           EE..EEEEE-S CS
                    B3  89 efelvvkvfrk 99 
                           +f  +v+++r+
  Bostr.26833s0482.2.p  96 SF--WVRIHRN 104
                           88..**99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-219104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-2110104IPR015300DNA-binding pseudobarrel domain
CDDcd100171.56E-1711103No hitNo description
PROSITE profilePS5086313.57811105IPR003340B3 DNA binding domain
SMARTSM010195.0E-2013105IPR003340B3 DNA binding domain
PfamPF023627.7E-1813104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-5199282IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-6199282IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.12204294IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MELENGFPPY PDFLKIFNSH EHSQHLVIPR GYNKYYPNPL PQTAVLKKPE GNFWTVKWKI  60
SKEETISFQE GWEKFVKDNG LIDRDFLLFT YDGSRSFWVR IHRNGSPVAA STPIKIQEIS  120
DDEDETTGDG EHHMEEGDSH ENMIVSLSLG TSDEVSDDDD DEDIAICEVN KASGSSKKGR  180
VDRTSSIPDS INLEAYLDDP QNPFFIATSS CSRRVLVIST KVVKDYELKF ERTINLIDDF  240
GELKRNVGKW KDRVVVHKWD EIYNRNKAKQ GDLIICEILR EGDVVRTVKM HFVKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A3e-16131021199At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866225.11e-166hypothetical protein ARALYDRAFT_332063
SwissprotQ9FHH11e-154Y5772_ARATH; B3 domain-containing protein At5g57720
TrEMBLD7MNV01e-166D7MNV0_ARALL; Putative uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_80014061e-165(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57720.11e-143B3 family protein