PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0222.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family AP2
Protein Properties Length: 480aa    MW: 52686.6 Da    PI: 8.1821
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0222.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.3e-17156205155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Bostr.26833s0222.1.p 156 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 205
                           78*******************......55***********************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.35E-15156213IPR016177DNA-binding domain
CDDcd000182.08E-11156212No hitNo description
PfamPF008471.2E-8156205IPR001471AP2/ERF domain
PROSITE profilePS5103217.359157213IPR001471AP2/ERF domain
SMARTSM003801.3E-30157219IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-16157213IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MLDLNLDVDS AESTQNGRDS VTVKGVSLDQ MDESVTSNSS VVNAEASSCI NGEEELCSTR  60
TVKFQFEILK GGEEDEDDER SAVMTKEFFP VARDGMNFMD SSAQSSRRTV DISFHRGKQG  120
GDFIGSGSGG GDAARVMQPP SQPVKKSRRG PRSKSSQYRG VTFYRRTGRW ESHIWDCGKQ  180
VYLGGFDTAH AAARAYDRAA VKFRGLEADI NFIISDYEED LKQMANLSKE EVVQVLRRQS  240
SGFSRNNSRY QGVALQKIGG WGAQMEQFHG NMACDKAAIQ WNRRQTASLI EPHASRMIPE  300
AANVKLDLNL GISLSLGDGP KQKRLHHVPN SIICGRNTKM ENHMAAASCD TSFNFLKRGS  360
DHLNNQHALP SAFFSPMERT PEKGLMSRSH QSFPARTWQG HDQSSGGTVI AATAPPLFSN  420
AASSGFSLSD TRPPSSPATP HPSQPFINLN QPGLYVIHPS DYASQHHHHS LMNRSRPPP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00616PBMTransfer from AT5G60120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0222.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0019160.0BT001916.1 Arabidopsis thaliana clone C105157 putative APETALA2 protein (At5g60120) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874049.10.0AP2-like ethylene-responsive transcription factor TOE2 isoform X2
RefseqXP_020888751.10.0AP2-like ethylene-responsive transcription factor TOE2 isoform X2
SwissprotQ9LVG20.0TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLR0EVS30.0R0EVS3_9BRAS; Uncharacterized protein
STRINGBostr.26833s0222.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128361730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.10.0target of early activation tagged (EAT) 2