PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0155.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bZIP
Protein Properties Length: 198aa    MW: 22869.7 Da    PI: 6.798
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0155.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.63.2e-1462122363
                           XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           e +r rr+ +NRe+ArrsR RKk++ieeL++ v++L   N+ L +++ +l +   ++ +e+
  Bostr.26833s0155.1.p  62 EERRVRRMVSNRESARRSRMRKKKQIEELQQQVEQLMMLNHHLSEKVINLLESNHQVLQEN 122
                           56899******************************************99999999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-1560124IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.25462125IPR004827Basic-leucine zipper domain
PfamPF001702.0E-1262122IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.0E-1164118No hitNo description
Gene3DG3DSA:1.20.5.1701.7E-1264120No hitNo description
CDDcd147023.63E-1765116No hitNo description
PROSITE patternPS0003606782IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MESGFHRSHC FDILEGVPPQ DDHFNSAFLP NTDFNVQLQS VSTRSNNQSQ LDPNAVEGLA  60
PEERRVRRMV SNRESARRSR MRKKKQIEEL QQQVEQLMML NHHLSEKVIN LLESNHQVLQ  120
ENSQLKEKVS SFHLLMADVL LPMRNAETNI NDRNVNHLRG ETSNRPTNSP FASGTMIDTY  180
MCDFYTAITY LHLYIDK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026881e-154CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankAB0154721e-154AB015472.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAE1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281849.11e-128hypothetical protein CARUB_v10028041mg
TrEMBLR0EZJ91e-128R0EZJ9_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.3__2744__AT5G60830.11e-111(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61852545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60830.11e-97basic leucine-zipper 70