PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0076.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 248aa    MW: 27788.3 Da    PI: 6.8022
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0076.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.2e-2092142255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +++GVr+++ +g+++AeIrdp   + k  r++lg+++ta eAa+a+++a+ kl+g
  Bostr.26833s0076.1.p  92 HHRGVRRRP-WGKYAAEIRDP---NkKGSRIWLGTYDTAVEAARAYDQAAFKLRG 142
                           68*******.**********9...4345*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.592150IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-2392152IPR016177DNA-binding domain
PfamPF008479.0E-1492142IPR001471AP2/ERF domain
SMARTSM003808.6E-3892156IPR001471AP2/ERF domain
CDDcd000183.81E-3192150No hitNo description
Gene3DG3DSA:3.30.730.102.0E-3192150IPR001471AP2/ERF domain
PRINTSPR003671.1E-993104IPR001471AP2/ERF domain
PRINTSPR003671.1E-9116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MATKQESLAI EFISQHLLTD FASMETQVSS FTFHETEPSL FTNQVHNFHS ETINQSPRPN  60
STLNRRKPPL PNLFVPRTVS TKTEKIEEEE RHHRGVRRRP WGKYAAEIRD PNKKGSRIWL  120
GTYDTAVEAA RAYDQAAFKL RGRKAILNFP LDVRATSETC FEEGVIGLGK RKRVKSSPPE  180
EEKAVAARVK VDVEESNTSE TMEAEVETVP LTPSCWLGFW DVGADDGIFS IPPLSPTSPN  240
FSVISVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2791153163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-2791155468ATERF1
3gcc_A6e-2791155468ATERF1
5wx9_A1e-2686150872Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00572DAPTransfer from AT5G61600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0076.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0886940.0AY088694.1 Arabidopsis thaliana clone 92102 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281978.11e-148ethylene-responsive transcription factor ERF104
SwissprotQ9FKG11e-127EF104_ARATH; Ethylene-responsive transcription factor ERF104
TrEMBLR0F0T31e-146R0F0T3_9BRAS; Uncharacterized protein
STRINGBostr.26833s0076.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134641828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61600.11e-121ethylene response factor 104
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]