PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26675s0318.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 133aa    MW: 14747 Da    PI: 6.9726
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26675s0318.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.7e-201868255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          +++GVr+++ +g+++AeIrd ++ g   r++lg+f+tae+Aa+a+++a+ +++g
  Bostr.26675s0318.1.p 18 KFRGVRRRP-WGKYAAEIRDSRKHG--ERVWLGTFDTAEDAARAYDRAAYSMRG 68
                          89*******.**********65443..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.98E-171877No hitNo description
SMARTSM003804.3E-351882IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-231878IPR016177DNA-binding domain
PROSITE profilePS5103223.4591876IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-321878IPR001471AP2/ERF domain
PfamPF008472.6E-141868IPR001471AP2/ERF domain
PRINTSPR003672.8E-111930IPR001471AP2/ERF domain
PRINTSPR003672.8E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MDQGDRSGGG GGGAEHVKFR GVRRRPWGKY AAEIRDSRKH GERVWLGTFD TAEDAARAYD  60
RAAYSMRGQA AILNFPHEYN MGTGSSSTAT NSSSSSRQVF EFEYLDDSVL DELLEYGENY  120
NKTHNINTGK RQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-5311091114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26675s0318.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains). Not affected by methyl jasmonate (MeJA), ethylene or salicylic acid (SA). {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0264211e-150BT026421.1 Arabidopsis thaliana At1g04370 mRNA, complete cds.
GenBankCP0026841e-150CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF19P191e-150AC000104.1 Sequence of BAC F19P19 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305893.13e-66ethylene-responsive transcription factor 14
SwissprotP938222e-61ERF97_ARATH; Ethylene-responsive transcription factor 14
TrEMBLR0GSM36e-65R0GSM3_9BRAS; Uncharacterized protein
STRINGBostr.26675s0318.1.p1e-93(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.12e-59Ethylene-responsive element binding factor 14