PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26527s0412.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 304aa    MW: 34895.3 Da    PI: 10.0863
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26527s0412.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.62.7e-1919111197
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                           ffk+l ++d +++ + ++p + +++++  k +s++++l+ ++g sW vk+  +k++   y+  +GW++Fv++ngL e++ ++F+++ ++
  Bostr.26527s0412.1.p  19 FFKILRREDLSSEIMRMIPHDLIRSISD-KSSSFKMVLKVPWGSSWPVKI--SKNPYFhYMEDRGWNQFVNDNGLGENEYLTFTHEANM 104
                           99************************64.5799*****************..99998857777**********************999* PP

                           EE..EEEEE CS
                    B3  89 efelvvkvf 97 
                           +f  +v ++
  Bostr.26527s0412.1.p 105 CF--NVNIY 111
                           *9..66665 PP

2B349.95.7e-162243011597
                           -EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                    B3  15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                            l +pkkf++ h+ +  e+k+ ++ +++g +sWev++    ++ +  +++GW++ +k+ gL +gD+++Fkl++   +e++vkv 
  Bostr.26527s0412.1.p 224 YLAIPKKFVDMHMPN--ETKMFKIHHPRGkKSWEVTY--VVSDVQSRFSAGWSRLAKELGLVVGDVCTFKLIK--PTEMCVKVS 301
                           478*********855..66799999*99989******..666666679**********************987..666788876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-1914115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-2014118IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-1817111No hitNo description
PROSITE profilePS5086312.95719114IPR003340B3 DNA binding domain
SMARTSM010195.3E-2319114IPR003340B3 DNA binding domain
PfamPF023622.0E-1719111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-19210301IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-20210300IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.252210303IPR003340B3 DNA binding domain
CDDcd100179.94E-16211302No hitNo description
SMARTSM010194.6E-17213303IPR003340B3 DNA binding domain
PfamPF023625.4E-12222300IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MVKNRVFGQV MERGDNPAFF KILRREDLSS EIMRMIPHDL IRSISDKSSS FKMVLKVPWG  60
SSWPVKISKN PYFHYMEDRG WNQFVNDNGL GENEYLTFTH EANMCFNVNI YEADGKEMLR  120
PRQSSTIASS SEERKSIYID LKKEGEIESC SESSYPGLKT AESTSGRLKQ KQELNLRKKK  180
AEETKKSKKR VKRKVDTVCD DSEAGTSSLV PKFKLTIKKS HLLYLAIPKK FVDMHMPNET  240
KMFKIHHPRG KKSWEVTYVV SDVQSRFSAG WSRLAKELGL VVGDVCTFKL IKPTEMCVKV  300
SKE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166178RLKQKQELNLRKK
2184192KKSKKRVKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2270350.0AK227035.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-55-P16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010454021.10.0PREDICTED: B3 domain-containing protein At5g18000-like isoform X1
SwissprotQ9FJG21e-169Y5800_ARATH; B3 domain-containing protein At5g18000
TrEMBLR0FIQ90.0R0FIQ9_9BRAS; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_60014990.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.11e-165VERDANDI