PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26527s0401.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 230aa    MW: 26338.3 Da    PI: 9.8596
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26527s0401.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.72.7e-101989173
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT CS
                    B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkang 73
                          ffk+l +++ +++ +  +p  f++++++ +e+s +++l+ ++g sW+v++  +++++ y+++ + W +F ++ng
  Bostr.26527s0401.1.p 19 FFKILPRAYLSSEIMRGIPLIFIKSISE-EESSAKMVLKVSWGSSWTVRI--SRNPSFYFMEkNEWDQFLSDNG 89
                          8999999999999999*******99965.57899****************..9999997766266********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-91289IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-81389IPR015300DNA-binding pseudobarrel domain
CDDcd100177.29E-81789No hitNo description
SMARTSM010190.001919112IPR003340B3 DNA binding domain
PfamPF023627.6E-91989IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-5164221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-7166219IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MDKNRAFGKI MDDADNPGFF KILPRAYLSS EIMRGIPLIF IKSISEEESS AKMVLKVSWG  60
SSWTVRISRN PSFYFMEKNE WDQFLSDNGN NGKELLRPRK SATTVASSSG LNKREQRKNI  120
YKDVKKKEVE SSSESSYPGL ISAESKKNKM KVETVCDDSE DDSSSIVPEF TINIKKSYLI  180
FLGIPKMFME LHMPKETTMF KIHDPEGKKS WDVMYKITGI QSRFVWPKI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0055531e-81BT005553.1 Arabidopsis thaliana clone U20966 unknown protein (At5g18090) mRNA, complete cds.
GenBankBT0040991e-81BT004099.1 Arabidopsis thaliana clone RAFL15-45-L21 (R20966) unknown protein (At5g18090) mRNA, complete cds.
GenBankAY0878531e-81AY087853.1 Arabidopsis thaliana clone 38961 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290043.11e-108hypothetical protein CARUB_v10003677mg
SwissprotQ9FK611e-106Y5809_ARATH; B3 domain-containing protein At5g18090
TrEMBLR0FLU31e-108R0FLU3_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.6__1808__AT5G18090.11e-104(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.12e-95B3 family protein