PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26326s0067.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 224aa    MW: 24733.7 Da    PI: 4.59
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26326s0067.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.6e-162775355
                   AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+G r ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Bostr.26326s0067.1.p 27 YRGARMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALSIKG 75
                          89999888.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-202684IPR016177DNA-binding domain
SMARTSM003802.0E-352689IPR001471AP2/ERF domain
PROSITE profilePS5103222.9982683IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-302784IPR001471AP2/ERF domain
PfamPF008472.5E-102775IPR001471AP2/ERF domain
PRINTSPR003673.4E-102738IPR001471AP2/ERF domain
CDDcd000181.14E-322785No hitNo description
PRINTSPR003673.4E-104965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MVESHGSDTE CSSTKKIKDK AKETVLYRGA RMRSWGKWVS EIREPRKKSR IWLGTFPTAE  60
MAARAHDVAA LSIKGSSAIL NFPELADYLP QPVSLSPQDI QAAAVQAANM DFKTVPFHLQ  120
DKTTPSQTRC ETEKIENGSS SSSSSSSYSS LSLSSMLSEE LDEIVELPSL DNNVKNDFGL  180
FDSLEGLVSM SPWLDATKKD FTYGDDSVIL EPIPQENLLW NYE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1823841173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26326s0067.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought. {ECO:0000269|PubMed:16307362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010472602.11e-126PREDICTED: ethylene-responsive transcription factor ERF042-like
SwissprotQ52QU11e-107ERF42_ARATH; Ethylene-responsive transcription factor ERF042
TrEMBLR0FYP11e-116R0FYP1_9BRAS; Uncharacterized protein
STRINGBostr.26326s0067.1.p1e-164(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25820.11e-105ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]