PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25993s0537.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family LBD
Protein Properties Length: 260aa    MW: 29256.1 Da    PI: 7.1868
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25993s0537.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.26.4e-3971071100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           +C aCk+lrrkC k+Cv+apyf +eq +++fa++h++FGasn +kll++lp e+r++a+++++yeA+ar +dP+yG+v++i++lqqq+ 
  Bostr.25993s0537.1.p   7 PCGACKFLRRKCIKGCVFAPYFFHEQgASHFAAIHQVFGASNASKLLSHLPMEDRREAATTIYYEAQARRQDPIYGCVSHIFSLQQQVV 95 
                           7***********************9989************************************************************* PP

                DUF260  89 qlkaelallkee 100
                           +l+++l+ lk++
  Bostr.25993s0537.1.p  96 NLQTQLEILKQQ 107
                           ********9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.5086108IPR004883Lateral organ boundaries, LOB
PfamPF031957.4E-377105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MNGSGSPCGA CKFLRRKCIK GCVFAPYFFH EQGASHFAAI HQVFGASNAS KLLSHLPMED  60
RREAATTIYY EAQARRQDPI YGCVSHIFSL QQQVVNLQTQ LEILKQQATQ IMTARDSPSI  120
GNPNCYRDNK PQHLQEPQDL HLRHHHNNDH HHHHHQTTSN YQNRSLETEH NSDLKNIMTS  180
CYHQNETGTR SFIGAGGDTT AASYYYNSSS SGNCSEEINS TIGEFSKYSE LDQKLNTFNQ  240
YHHGGNDLLS ASFGYIPYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3531027105LOB family transfactor Ramosa2.1
5ly0_B2e-3531027105LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25993s0537.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:15659631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738481e-174AB473848.1 Arabidopsis thaliana ASL15 mRNA for ASYMMETRIC LEAVES2-like 15 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506070.11e-149PREDICTED: LOB domain-containing protein 17-like
SwissprotQ9SLB61e-131LBD17_ARATH; LOB domain-containing protein 17
TrEMBLD7LI621e-135D7LI62_ARALL; Uncharacterized protein
STRINGBostr.25993s0537.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.11e-114LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]