PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25993s0277.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 291aa    MW: 31591.5 Da    PI: 4.4856
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25993s0277.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-1894143255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  Bostr.25993s0277.1.p  94 TYRGVRMRS-WGKWVSEIREPKK---KSRIWLGTYPTAEMAARAHDVAALAIKG 143
                           69****998.**********854...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-2194151IPR016177DNA-binding domain
SMARTSM003803.0E-3894157IPR001471AP2/ERF domain
PROSITE profilePS5103223.19694151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-3194152IPR001471AP2/ERF domain
PfamPF008472.0E-1294143IPR001471AP2/ERF domain
PRINTSPR003672.5E-1095106IPR001471AP2/ERF domain
CDDcd000182.27E-3295153No hitNo description
PRINTSPR003672.5E-10117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MERQINIESS VSQVTFISSA ISAFSAAASL SSSPTTSSSS SSSSTNSNFP HEEDNSKRKA  60
SRRSLSSLAS AEDDDQTGEG GKKRKINGGD KHPTYRGVRM RSWGKWVSEI REPKKKSRIW  120
LGTYPTAEMA ARAHDVAALA IKGTTAYLNF PELSGELPRP VTNSPKDIQA AASLAAVNWQ  180
DPVNDVNNSE EVAELSEVEP SRAVVVFSSD TSTTTTTQSQ ESSEASSCAS TSCTDKDNDE  240
EKLFDLPDLF TDENEMIIRN DAFCYYSSTW QLCGADAGFR LEEPFFCLND *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1789152973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25993s0277.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0023880.0AC002388.3 Arabidopsis thaliana chromosome 2 clone T13E15 map m336, complete sequence.
GenBankAK2296160.0AK229616.1 Arabidopsis thaliana mRNA for putative AP2 domain transcription factor, complete cds, clone: RAFL19-54-M23.
GenBankBT0085640.0BT008564.1 Arabidopsis thaliana clone U50797 putative AP2 domain transcription factor (At2g44940) mRNA, complete cds.
GenBankBT0086770.0BT008677.1 Arabidopsis thaliana clone RAFL19-54-M23 (R50797) putative AP2 domain transcription factor (At2g44940) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880148.11e-162ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ71e-138ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLD7LBU11e-160D7LBU1_ARALL; Uncharacterized protein
STRINGBostr.25993s0277.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-119ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]