PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25993s0234.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family LBD
Protein Properties Length: 193aa    MW: 21278.5 Da    PI: 7.8538
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25993s0234.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.72.2e-39171171100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           +C aCk+lrrkC+k+Cv+apyf aeq +++fa+vhk+FGasn +k+l +lp ++r da+ +l+yeA ar+rdPvyG+vg++++lq+q++
  Bostr.25993s0234.1.p  17 PCGACKFLRRKCVKGCVFAPYFDAEQgTARFAAVHKVFGASNASKMLLRLPLHKRLDAVVTLCYEAMARLRDPVYGSVGHLFSLQHQVM 105
                           7***********************9989************************************************************* PP

                DUF260  89 qlkaelallkee 100
                           +l+aela+++++
  Bostr.25993s0234.1.p 106 NLQAELAHVQAR 117
                           *******99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.18716118IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-3817115IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MMTGNLNGGG RGGGEGPCGA CKFLRRKCVK GCVFAPYFDA EQGTARFAAV HKVFGASNAS  60
KMLLRLPLHK RLDAVVTLCY EAMARLRDPV YGSVGHLFSL QHQVMNLQAE LAHVQARLST  120
FQRFPLQSPQ QMQPPPFDLA HNNEYQMEPS NLDVVWEAEH IPQGGIEDGE FQELAMQYIS  180
RYLPAVKLPA CT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-36131157110LOB family transfactor Ramosa2.1
5ly0_B8e-36131157110LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25993s0234.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738560.0AB473856.1 Arabidopsis thaliana ASL23 mRNA for ASYMMETRIC LEAVES2-like 23 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_182065.11e-113LOB domain-containing protein 19
SwissprotO221321e-114LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A178VSY11e-111A0A178VSY1_ARATH; LBD19
STRINGBostr.25993s0234.1.p1e-142(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.11e-107LOB domain-containing protein 19