PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25993s0206.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family TCP
Protein Properties Length: 362aa    MW: 38128 Da    PI: 10.1433
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25993s0206.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.15.2e-3773160288
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 
                           + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl++a+pai+++tgt++ +a ++  +++ +  + ++  +
  Bostr.25993s0206.1.p  73 PLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMsVNGTLKIPTTTNADS 160
                           57999***********************************************************777774442111111111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-3078158IPR005333Transcription factor, TCP
PROSITE profilePS5136927.32779133IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MATIQKQEEV GGKDQSLRAV DLTIINGVRN VETSRPFPLN PTVSLEPKAE PVMQIQAPSI  60
SMSLAPPSST GPPLKRASTK DRHTKVEGRG RRIRMPATCA ARIFQLTREL GHKSDGETIR  120
WLLENAEPAI IAATGTGTVP AIAMSVNGTL KIPTTTNADS DLGENPMKKK RKRPSNSEYI  180
DINDAVSASS GLAPISTTTT TIQPPQAPTS STVAQQHLPQ GMYPMWAIPS NAVIPTVGAF  240
FLVPQIAGPS NQPQILAFPA AAAAASPSSY VAAVQQASSM ARPPSHQVYP SSGVSNVSGS  300
NSSRTTSVMA PSSSSGITTG GSSPTATTTT THMLRDFSLE VYEKQELHQF MTTTTTRSSN  360
H*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00316DAPTransfer from AT2G45680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25993s0206.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0036800.0AC003680.3 Arabidopsis thaliana chromosome 2 BAC F17K2 genomic sequence, complete sequence.
GenBankAF3706060.0AF370606.1 Arabidopsis thaliana putative PCF2-like DNA binding protein (At2g45680; F17K2.21) mRNA, complete cds.
GenBankAK2215990.0AK221599.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-89-L23.
GenBankAY0562140.0AY056214.1 Arabidopsis thaliana putative PCF2 DNA binding protein (At2g45680) mRNA, complete cds.
GenBankAY1139810.0AY113981.1 Arabidopsis thaliana putative PCF2 DNA binding protein (At2g45680) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885215.10.0transcription factor TCP9
SwissprotO646470.0TCP9_ARATH; Transcription factor TCP9
TrEMBLD7LD720.0D7LD72_ARALL; Uncharacterized protein
STRINGBostr.25993s0206.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-170TCP family protein