PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25993s0004.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 164aa    MW: 18457.8 Da    PI: 10.0106
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25993s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-2052100355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++ a+ k++g
  Bostr.25993s0004.1.p  52 YRGVRQRP-WGKWAAEIRDPRK---GVRVWLGTFKTAEEAARAYDVAAIKIRG 100
                           9*******.**********954...4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.9E-3451109IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-2451108IPR016177DNA-binding domain
PROSITE profilePS5103225.55451108IPR001471AP2/ERF domain
SMARTSM003807.0E-4351114IPR001471AP2/ERF domain
PRINTSPR003672.8E-125263IPR001471AP2/ERF domain
CDDcd000181.01E-3652110No hitNo description
PfamPF008472.6E-1452100IPR001471AP2/ERF domain
PRINTSPR003672.8E-127490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MCGGAIISDF VRSKSSFAES VPSQVGSVSN KKRKPVSVGG QRDGNRERKN LYRGVRQRPW  60
GKWAAEIRDP RKGVRVWLGT FKTAEEAARA YDVAAIKIRG RKAKLNFPNT DTNQNEMISE  120
NKVESLSEEL MAFEDNMSFY QIPFLDDQSV TDLGHLWSFQ DSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2352108663ATERF1
3gcc_A2e-2352108663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25993s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0746451e-115AY074645.1 Arabidopsis thaliana At2g47520/T30B22.18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296358.14e-97ethylene-responsive transcription factor ERF071
SwissprotO222593e-90ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBLR0G1V41e-95R0G1V4_9BRAS; Uncharacterized protein
STRINGBostr.25993s0004.1.p1e-119(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-82ERF family protein
Publications ? help Back to Top
  1. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  2. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]
  3. Eysholdt-Derzsó E,Sauter M
    Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling.
    Plant Physiol., 2017. 175(1): p. 412-423
    [PMID:28698356]
  4. Eysholdt-Derzsó E,Sauter M
    Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis.
    Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108
    [PMID:29996004]