PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25542s0167.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 276aa    MW: 31246.9 Da    PI: 4.8073
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25542s0167.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.23.1e-2194144256
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                            y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ kl+ge
  Bostr.25542s0167.1.p  94 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAAMAYDLAAYKLRGE 144
                           59******9.**********965...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.27E-3593151No hitNo description
SuperFamilySSF541711.83E-2394151IPR016177DNA-binding domain
PROSITE profilePS5103223.61794151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-3294152IPR001471AP2/ERF domain
SMARTSM003805.5E-3894157IPR001471AP2/ERF domain
PRINTSPR003671.9E-1195106IPR001471AP2/ERF domain
PfamPF008475.2E-1595144IPR001471AP2/ERF domain
PRINTSPR003671.9E-11117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MAAIDMFNSN TDLSDPFKEE LMKALQPFNN TVSSLSPYSN TIFGFNQTTP LGLNQLTPYQ  60
IHQIQNQLNQ RRNTISPNLA PKPVPMKNMT TQKLYRGVRQ RHWGKWVAEI RLPKNRTRLW  120
LGTFDTAEEA AMAYDLAAYK LRGELARLNF PQFRHEDGYY GGDSCFNPLH SSVDAKLQAI  180
CQSLGKTEDD HLPCSETELF PPKTEYQESK YGFLRSVENS FSDESQVESS SPESCITTTF  240
LDFSDSGFDE FGSFGLEKFP SVEIDWDAIS KLSES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2193151160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25542s0167.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0226050.0AL022605.3 Arabidopsis thaliana DNA chromosome 4, BAC clone T19P19 (ESSA project).
GenBankAL1615950.0AL161595.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 91.
GenBankBT0257190.0BT025719.1 Arabidopsis thaliana At4g39780 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006286220.10.0ethylene-responsive transcription factor ERF060
SwissprotO656650.0ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLR0H6F00.0R0H6F0_9BRAS; Uncharacterized protein
STRINGBostr.25542s0167.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-143ERF family protein