PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.24513s0101.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 245aa    MW: 27365 Da    PI: 5.0564
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.24513s0101.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-1787135354
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                           y+GVr ++ +g+++AeIrd + ng   r++lg+f+ aeeAa a+++a+ + +
  Bostr.24513s0101.1.p  87 YRGVRKRP-WGKFAAEIRDSTRNG--IRVWLGTFDKAEEAALAYDQAAFATK 135
                           9*******.**********44465..*********************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.2E-3586150IPR001471AP2/ERF domain
PfamPF008471.9E-1186133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-2986145IPR001471AP2/ERF domain
PROSITE profilePS5103221.73386144IPR001471AP2/ERF domain
PRINTSPR003674.1E-108798IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-2187146IPR016177DNA-binding domain
CDDcd000182.34E-2887145No hitNo description
PRINTSPR003674.1E-10110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEYSQSSMYS SPSSWSSSQE SLLWNESCFF DQSSDPQSFF CPNYDYSDDF FSFESSEMMI  60
KEEIQNSEVS HHSEEEEKVG IDEERSYRGV RKRPWGKFAA EIRDSTRNGI RVWLGTFDKA  120
EEAALAYDQA AFATKGSLAT LNFPVEVVRE SLKKMENVNL HDGGSPVMAL KRKHSLRNRP  180
RGKKRSSSSS SSSSSYSSSY SSSSSASSTS RSSKQSVVKQ ESGTLVVFED LGAEYLEQLL  240
MSSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2785147163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00286DAPTransfer from AT2G31230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.24513s0101.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065930.0AC006593.5 Arabidopsis thaliana chromosome 2 clone F16D14 map nga361, complete sequence.
GenBankAY0704430.0AY070443.1 Arabidopsis thaliana putative ethylene reponse factor AP2 domain transcription factor (At2g31230) mRNA, complete cds.
GenBankAY0965630.0AY096563.1 Arabidopsis thaliana putative ethylene reponse factor AP2 domain transcription factor (At2g31230) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_850162.11e-136ethylene-responsive element binding factor 15
SwissprotQ8VYM01e-137ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A178VV981e-133A0A178VV98_ARATH; ERF15
STRINGBostr.24513s0101.1.p1e-177(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.12e-86ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]