PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23997s0021.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bZIP
Protein Properties Length: 163aa    MW: 17990.8 Da    PI: 10.194
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23997s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.62.1e-1681141161
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                           +ke kr +r+ +NR++A+  R+RKka++ eLe++vk Le++N++L ++l++l++e + l+ 
  Bostr.23997s0021.1.p  81 DKENKRLKRLLRNRVSAQQARERKKAYLSELENRVKDLENKNSELEERLSTLQNENQMLRH 141
                           5899****************************************************98865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000411.0E-7621IPR001630cAMP response element binding (CREB) protein
PRINTSPR000411.0E-78096IPR001630cAMP response element binding (CREB) protein
SMARTSM003382.8E-1481145IPR004827Basic-leucine zipper domain
PfamPF001701.9E-1482142IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.87583146IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.9E-1785145No hitNo description
SuperFamilySSF579598.75E-1485143No hitNo description
CDDcd147041.11E-1686137No hitNo description
PROSITE patternPS00036088103IPR004827Basic-leucine zipper domain
PRINTSPR000411.0E-798118IPR001630cAMP response element binding (CREB) protein
PRINTSPR000411.0E-7118135IPR001630cAMP response element binding (CREB) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MQEQATSSLP SSSERSSSSA PHLEIKEGIE SDEEIRRVPE FGGEAAGKET SGRESGTATG  60
QERIQTTVGE SQRKRGRTPA DKENKRLKRL LRNRVSAQQA RERKKAYLSE LENRVKDLEN  120
KNSELEERLS TLQNENQMLR HILKNTTGNK RGGGGSNADA SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A2e-20106145342Transcription factor HY5
2oqq_B2e-20106145342Transcription factor HY5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0255190.0BT025519.1 Arabidopsis thaliana At5g11260 mRNA, complete cds.
GenBankAB0054560.0AB005456.1 Arabidopsis thaliana mRNA for HY5, complete cds.
GenBankAB0052950.0AB005295.1 Arabidopsis thaliana mRNA for HY5, complete cds.
GenBankAK2293620.0AK229362.1 Arabidopsis thaliana mRNA for bZip transcription factor HY5 / AtbZip56, complete cds, clone: RAFL16-60-N08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873502.13e-95hypothetical protein ARALYDRAFT_909087
SwissprotO246465e-91HY5_ARATH; Transcription factor HY5
TrEMBLD7M3N83e-95D7M3N8_ARALL; Putative uncharacterized protein
STRINGscaffold_601144.18e-95(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56912749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.12e-74bZIP family protein