PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2392s0039.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family M-type_MADS
Protein Properties Length: 323aa    MW: 36942.8 Da    PI: 7.6618
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2392s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.37.4e-171151343
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                         i+n+s r+ tf kR++g++KK +ELS+LC++  + ii+s+ 
  Bostr.2392s0039.1.p 11 ISNDSSRKATFKKRKKGLMKKVNELSTLCGITSCAIIYSPY 51
                         9**************************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.9E-24160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.058149IPR002100Transcription factor, MADS-box
CDDcd002664.28E-23285No hitNo description
SuperFamilySSF554553.66E-24295IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-9323IPR002100Transcription factor, MADS-box
PfamPF003195.5E-171151IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MTRKKVKLAY ISNDSSRKAT FKKRKKGLMK KVNELSTLCG ITSCAIIYSP YDTSPEVWPS  60
NSGVQRVISE FRTLPEMDQH KKMVDQEAFL KQRIAKATEN LRRQRKGNRE LEMTEVMFQC  120
LIGNMGMFHL NIMDLNDLGY LIEQYLKDVN RRVEILQNSG LEIGESFSTA AAASEENRLM  180
TDMAATTTPT ATIYEVGSSS SSAAVAALFN PNQQQQFCHP TAPHIGVYEQ PPNLNLNLNH  240
NQNQQQWFME MMNHPEQMRY PVENMRFPFI DDNRHNHNHI HHYQEEQQHQ IRGESSTALD  300
AANSSSVIPV TCPNTTNNIW FR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYISNDSSRKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2392s0039.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8306960.0AB830696.1 Turritis glabra AGL80 gene for agamous-like MADS-box protein AGL80, partial cds, isolate: e064.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471368.11e-162PREDICTED: LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-152AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A178UE431e-150A0A178UE43_ARATH; FEM111
STRINGBostr.2392s0039.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-134AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]