PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23794s0711.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 594aa    MW: 65127.1 Da    PI: 6.9467
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23794s0711.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.68e-07100120526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           +C+ffa+ G+C  G +CkF H+
  Bostr.23794s0711.1.p 100 PCKFFAK-GWCFNGVSCKFLHV 120
                           7******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.15E-695119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.31495122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-4100121IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4100120IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MSDSDMDIDD DEVEQKVQVN TIGGEFELLH KPIQASNSRN DVKRHSVTAP SDKQAKSIKE  60
QAFAQDNGTL SRFPAPGITR KSFFPGGEGN EPEQKRAALP CKFFAKGWCF NGVSCKFLHV  120
KENSNCTSQQ QAENNMAGSS YIQSDVERRI SDSKEGVRVS QLSRNGVTPL HTREDISFVN  180
PPGSQRVFSS MSFVNPPGSQ RVFPFNNEMR FMPSSENIGR ESLKQTCGAD FTDNRSLVIN  240
NSNSFTLRSS FVHEHGSSIS SYLKTDKGSS GPAWTGSLSS SVTSIPMNEC ASTVGHFEKG  300
NNIYGSGSLR TLQEIAVSSD KGAEGNTTSS RKKVSSDDWE PSEPFKASFT IPPYILPSSD  360
VFYDPFTDIE NLGDRSLNPS LSSKGEHTQK NSRQQKDGDS GSGPQARECK NDDKSSSCSQ  420
NQQEESVARR SLEANGVVEG VATSVVDQND TTTPSKEISS AVAAENKFVL KRSRPPGHDS  480
WHRSDGSSYK KTLKSDEIDG EVRSDAGMKV MRQFRTAVVE TIKEMLKPLW REGRLTKDVH  540
NMIVKKAAEK VVSAAVQFHQ VPTDTESVEQ YLGLSATKIV KLVEGYVEKY GKP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the FRIGIDA-mediated vernalization pathway, but not in the autonomous flowering pathway. Acts cooperatively with FRI (FRIGIDA) or FRL1 (FRIGIDA-LIKE 1) to promote FLC (FLOWERING LOCUS C) expression. Required for the stabilization of the FRI-C complex. {ECO:0000269|PubMed:16291783, ECO:0000269|PubMed:21282526}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.23794s0711.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288660.0AK228866.1 Arabidopsis thaliana mRNA for zinc finger (CCCH type) protein - like, clone: RAFL16-19-E15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010469419.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1
SwissprotQ84VG70.0FES1_ARATH; Protein FRIGIDA-ESSENTIAL 1
TrEMBLD7LGF20.0D7LGF2_ARALL; Frigida-essential 1
STRINGBostr.23794s0711.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134681521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.10.0C3H family protein
Publications ? help Back to Top
  1. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]