PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23794s0621.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 290aa    MW: 33195.6 Da    PI: 4.9365
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23794s0621.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.22.6e-07167211655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++ r RR+ri ++ +eL +l+P       +Kl+ ae+ + A +Y+k Lq
  Bostr.23794s0621.1.p 167 SIAARERRRRIAEKTHELGKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 211
                           567899*****************86.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.697161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-10165219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-9165218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-9167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-5167211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.76E-4183214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDCLSYFFNY DPPVQLQDCF LPDMNMIIPE SDSFFFQSQP QLEFHQPLFQ EEAPSQIHFD  60
PLCGQFLSTQ EIFLPNPKTE IFNETHDLDS FVPTPKRQKL VNSSYHCNNY NHFQSHNPSF  120
FDPLGDLDFV QEASTFPEFR VPDFSLAFKV GRGAQDDTKI PTLSSQSIAA RERRRRIAEK  180
THELGKLIPG GQKLNTAEMF QAAAKYVKFL QSQVGILQLM QTTKKGSSNV QMETRVLLES  240
QAIQEKLSTE EVCLVPCEMV QDLTTEETIW RNPKISREIN KLLSKDLAN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.23794s0621.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2344120.0AY234412.1 Arabidopsis thaliana hypothetical protein (At2g34820) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002879517.10.0transcription factor bHLH53
SwissprotQ84RD01e-179BH053_ARATH; Transcription factor bHLH53
TrEMBLD7LH480.0D7LH48_ARALL; Predicted protein
STRINGBostr.23794s0621.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-179bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]