PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23794s0571.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 283aa    MW: 32662.4 Da    PI: 10.437
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23794s0571.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.72.9e-1533973299
                          --SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3 32 esktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                           +++++++ ++g sWev++  +++++  ++ ++GW++Fv++n L + +f++F ++g+++f  +v +f++
  Bostr.23794s0571.1.p 33 LTRKMKIRAQWGSSWEVEI--CRNPKFyFMEKSGWERFVRDNALGDHEFLTFNHKGEMRF--TVNIFKQ 97
                          56789**************..9***99555569*********************999999..9999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.912498IPR003340B3 DNA binding domain
SMARTSM010196.4E-91698IPR003340B3 DNA binding domain
PfamPF023624.7E-133297IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-133397IPR015300DNA-binding pseudobarrel domain
CDDcd100176.31E-103396No hitNo description
Gene3DG3DSA:2.40.330.109.4E-153498IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-14185278IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-10187277IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.191189282IPR003340B3 DNA binding domain
SMARTSM010191.0E-7192282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MARNSDFDRC SEERKREREL LQGSLESSSE NMLTRKMKIR AQWGSSWEVE ICRNPKFYFM  60
EKSGWERFVR DNALGDHEFL TFNHKGEMRF TVNIFKQDDK EMLQPPQSMA FLASSKQGRC  120
SNLFPTTAAE SNGGGNYKRK LNFGKRKAKE SQNSKRTNDK LRPGLKTELS TKNVISVRRD  180
SSGASSSSVA EFTIFINQSY LIFLRFPKSV QKNHMPEQRT IFKIHHLNMK KSWNVVYLVS  240
ETDACFSGVW KRLAHEYPLA VGDTCKFTFL KPEKLILVVS KP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11337RKRERELLQGSLESSSENMLTRKMK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0203533e-89BT020353.1 Arabidopsis thaliana At2g35310 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002862460.11e-126transcriptional factor B3 family protein
SwissprotQ5PNU41e-124Y2531_ARATH; B3 domain-containing protein At2g35310
TrEMBLD7MXL51e-126D7MXL5_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh2_kg.457__2__AT2G35310.11e-126(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35310.11e-117B3 family protein